Gene
| Gene Model ID | pfu_aug1.0_2402.1_66308 |
|---|---|
| Locus | scaffold2402.1 : 2193 ... 13875 : - |
| To GenomeBrowser | scaffold2402.1:2193..13875 |
| Genes list of scaffold | scaffold2402.1 |
| Synonym | pfu_aug2.0_408.1_27362 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Hairy_orange domain containing 4 |
| Description | Best hit to XP_002738771 PREDICTED: hairy/enhancer-of-split related with YRPW motif 2-like [Saccoglossus kowalevskii] with 1e-07. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2402.1_66308.t1 | 1 | 1 | Hairy_orange | 15 | 52 | 1.8e-08 | 33.9 | 2.1e-12 | 3.1e-08 | 33.2 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2402.1_66308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2402.1_66308.t1 atgattggcctctcacctctacaacaagcggaagttgttttatcaggctacagagactgcgcagcggaagctattagata tctgacggaagttgaaaatatacccgcagacgatcctttagttcttggactacagtctcatctacacgaaaaacaaaaac atttagattttgttcagattttgattcaatatcataatacgatgaattctaccgaaagtcatgacgctgacctagaactg gggtcacttgatgattcgggagtgtcattacaaagtgaaaccgatccgtccttgaactttgacaccattgatgaaaacat cgtctcagattgtgaaccaacaagtgaacatatatctcaggatgtgaacattgtgtcgagtacaaactgcatcgtgcaat cggaacaggaaacaacgcctagtgcatctataactgcactggcagaggaaattctgtctctcattgaagaagaaggcatg acgtcagacagtgaaaaaattgacgatttcaatgaacaatag |
|
Protein
| Protein ID | pfu_aug1.0_2402.1_66308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2402.1_66308.t1 MIGLSPLQQAEVVLSGYRDCAAEAIRYLTEVENIPADDPLVLGLQSHLHEKQKHLDFVQILIQYHNTMNSTESHDADLEL GSLDDSGVSLQSETDPSLNFDTIDENIVSDCEPTSEHISQDVNIVSSTNCIVQSEQETTPSASITALAEEILSLIEEEGM TSDSEKIDDFNEQ |
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