Gene
| Gene Model ID | pfu_aug1.0_2402.1_66316 |
|---|---|
| Locus | scaffold2402.1 : 90246 ... 94787 : + |
| To GenomeBrowser | scaffold2402.1:90246..94787 |
| Genes list of scaffold | scaffold2402.1 |
| Synonym | pfu_aug2.0_1830.1_01859 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2402.1_66316.t1 | 1 | 1 | RVT_1 | 379 | 513 | 8.6e-08 | 31.7 | 1.9e-11 | 2.8e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2402.1_66316.t1 | gi|291232957|ref|XP_002736420.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2402.1_66316.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2402.1_66316.t1 atgatgcaaaggttctcagggcagtatttaattcgcgcactcagttctccgcctccaacatcccgaaagaagcgtcaaag tgttgaccgttatgtaaacaagcgggacgaccgagaccatatcgatgtgaaagtccaacatacaaagcaacatgccttgc atgccgacggttgcactcctcttgaaacactggatgagacccattttgatgttgtgcgtgacaatataacattgcatatc gaggctctagttgtaaaggatctggacgtcgacatactagccggcataccttttatgtcagaaaatgacatcagcatccg tcccgcaaaacacattatcatggtaggagataaccatgtcatcaaatataaccacagtcagtgctctctagtaaatcaca tacgtagagcccaagggcatatactaagggccccgtctgtaactatatggccaggtgatcatattgacattgctctacct gaacacataccgtcagagggtacagttgccatggaacctcgtatcgaacgcaccaacttaacatgcatctggccgaaacc agaaattgtcgatgttatagccggaaaagtccgagttatgaacaaaaccgatgaccctaaacttctgaagaaaaatgaac aattttgtcaagtacttccaacagtgctttgtgacaataccaatagctctgaacatcatacagatacacactccccacag aattcagcacgcagcgaaccgagcgcaacgggataccactcggatctagtgaatgtagaccctgatcatatactaagcac tgatcaacttgagctattccgcaaatctctccgtgaccatgatagcgtttttgaacctacgtataaggggtataatggta ccgtcggcaacttcgaagcatcaattaacatgggtcctacacagccaccccaacgcaagggtaggctaccgcaatattct catgagaaactccttatcctacaacaaaaatgtgatgatctgaaatcattgggagttctatgcaaaccagaagagctctc actaacagtagagtacctaaatccctcgtttctagtagctagggcaaaagggggtcataggcttgtaactgcctttgagg atgtaggacggtactcgaagccacaaccctctctaatgcccgatacagactcgatactacgtaaagtaggacaatggaaa tatctcatagtcgcagatcttacgagtgcgtttctccaaattcctctgtcccggcaatcgttgaaatattgcggtattgt tacccaatataaaggtaaaagagtctacacaagatgtgcaatgggcatgccgggctcagaaacagctcttgaggagctca tgagtcgtgtcttaggggatcacatacaggctggatatttggctaaattggcagatgatctttattgcgggggtaacagt ccagaggaactacataaaaactggaccaaagtaatggagtctcttgacacatgcaatctccgaatttcgccttcaaaaac cgtaatctgcccaaagtctaccacaatactaagctggatttggaccaaaggcagactctctgctagcccacacaagattt ctgtactcgcaaccagtaagcaacccgacactgtcaatggccttagattttttattggtgcatacaaggtacttgcacgt gtgttaccgagttgttctcatgctctgattcctttggaaaatgctatagccggattacagtctacggacaaagtagtatg gagcgatgctctctcagagcactttaacttcgcgcaaaggaagttgcaagaaacaaaagatatcgtgctcccgcgacgca gcgacaaactatggattgtgacagatggttctgtaagcaaatgcggcattggcgccacactttatgtaatgcgagacaac aagatatatttggcaggcttctttagtgcaaagttgagaaagcaccaagttacttggctgccgtgtgagatagaggcatt gtgcatagccgcctctgtcaaacatttctgtgcatatataacccagtccactcaaaaaacgactgtacttactgatagta agccttgcgtccaggctatcgaaaagctccgtcgtggtgagttctcagcaagcccacgtgtaacatcatttctatctaca gcaagcagataccaggtcaacttgctacatcttgctggatctgcaaatgttccatccgactttgcgagtagaaatgctgc ggattgttataacccatcttgccaagtctgtaacttcattgttcaaatggaggattctgtagtccgctccgctagccaat atcaatctcaacatgaagcgcagaacttaccgtttactacacgctcggcatggtacaacattcagtcagagtgtcctgat ctccgaagggtccatgctcaccttaaacagggaacacgtctgtctaggaagcttacaaacattcgcgacataaaacgata ccttaatgtagcaaaaattgctaaagacgggctattagttgctcatcgacaagaccctctaggaccattaaatgagctca tcatagttccgcgtaatgtgctggagggattactcactgcgattcatattcgaatggatcaccctaccaagcatcaaatg ctcttgcttgtcaaacgcaagttttatgccctcgatctgtcacaaacaatagaccgtgtttgtgactcatgtcatacctg cgcttccctccagaaggttcccacatcatacaatgagcagtcatcagatctaccacccgagcttgtgggagtaaacttcg ccgctgatgtgatccaacagaaccgcgacctagtttatctttattccgacaaagaaaagacaaaggctcgtccacgatat attgttgtcaacacaaatgatgattggtgctacataaagaaatttattgggaatcaactacgctctagttcctacaagat taaacaaagtgagtgctaccgtgtaccgtgcgagtcttctcctaaaagaagactgcaaataacaagcgattccgacgccg ccgaggatttatacgaacaaaattgtgaaagcgctcagccgcacaacataccaaacaccgacgttcgccaagaactaccg atagagcctgaccaagctctcgctgccgtaccggaaattctcgccatgccgctcactccgccacaagaatcatcagcttc cgtcaatactcccgactcagattccgaagtcgaaagtgatcatgcctatacgcgccctcaaaggacaaagaaacttccgt cgcacctaaaggaatatgtgttgtattag |
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Protein
| Protein ID | pfu_aug1.0_2402.1_66316.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2402.1_66316.t1 MMQRFSGQYLIRALSSPPPTSRKKRQSVDRYVNKRDDRDHIDVKVQHTKQHALHADGCTPLETLDETHFDVVRDNITLHI EALVVKDLDVDILAGIPFMSENDISIRPAKHIIMVGDNHVIKYNHSQCSLVNHIRRAQGHILRAPSVTIWPGDHIDIALP EHIPSEGTVAMEPRIERTNLTCIWPKPEIVDVIAGKVRVMNKTDDPKLLKKNEQFCQVLPTVLCDNTNSSEHHTDTHSPQ NSARSEPSATGYHSDLVNVDPDHILSTDQLELFRKSLRDHDSVFEPTYKGYNGTVGNFEASINMGPTQPPQRKGRLPQYS HEKLLILQQKCDDLKSLGVLCKPEELSLTVEYLNPSFLVARAKGGHRLVTAFEDVGRYSKPQPSLMPDTDSILRKVGQWK YLIVADLTSAFLQIPLSRQSLKYCGIVTQYKGKRVYTRCAMGMPGSETALEELMSRVLGDHIQAGYLAKLADDLYCGGNS PEELHKNWTKVMESLDTCNLRISPSKTVICPKSTTILSWIWTKGRLSASPHKISVLATSKQPDTVNGLRFFIGAYKVLAR VLPSCSHALIPLENAIAGLQSTDKVVWSDALSEHFNFAQRKLQETKDIVLPRRSDKLWIVTDGSVSKCGIGATLYVMRDN KIYLAGFFSAKLRKHQVTWLPCEIEALCIAASVKHFCAYITQSTQKTTVLTDSKPCVQAIEKLRRGEFSASPRVTSFLST ASRYQVNLLHLAGSANVPSDFASRNAADCYNPSCQVCNFIVQMEDSVVRSASQYQSQHEAQNLPFTTRSAWYNIQSECPD LRRVHAHLKQGTRLSRKLTNIRDIKRYLNVAKIAKDGLLVAHRQDPLGPLNELIIVPRNVLEGLLTAIHIRMDHPTKHQM LLLVKRKFYALDLSQTIDRVCDSCHTCASLQKVPTSYNEQSSDLPPELVGVNFAADVIQQNRDLVYLYSDKEKTKARPRY IVVNTNDDWCYIKKFIGNQLRSSSYKIKQSECYRVPCESSPKRRLQITSDSDAAEDLYEQNCESAQPHNIPNTDVRQELP IEPDQALAAVPEILAMPLTPPQESSASVNTPDSDSEVESDHAYTRPQRTKKLPSHLKEYVLY |
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