Gene
| Gene Model ID | pfu_aug1.0_2407.1_15798 |
|---|---|
| Locus | scaffold2407.1 : 40196 ... 66107 : + |
| To GenomeBrowser | scaffold2407.1:40196..66107 |
| Genes list of scaffold | scaffold2407.1 |
| Synonym | pfu_aug2.0_308.1_27199 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | chitin synthase like protein |
| Description | chitin synthase like protein, best hit to BLAST XP_001637059.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2407.1_15798.t1 | 2 | 1 | Glyco_transf_21 | 67 | 224 | 8.2e-13 | 48.0 | 9.7e-11 | 2.1e-07 | 30.4 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 1 | Glycos_transf_2 | 71 | 161 | 6.4e-10 | 38.9 | 2.0e-05 | 0.043 | 13.5 |
| pfu_aug1.0_2407.1_15798.t1 | 4 | 1 | Chitin_synth_2 | 75 | 292 | 8.0e-35 | 120.2 | 3.3e-29 | 7.1e-26 | 90.6 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 1 | Glyco_tranf_2_3 | 75 | 225 | 7.0e-16 | 58.7 | 3.3e-14 | 7.0e-11 | 42.3 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 1 | Glyco_trans_2_3 | 76 | 274 | 1.0e-22 | 80.8 | 1.0e-18 | 2.2e-15 | 56.8 |
| pfu_aug1.0_2407.1_15798.t1 | 2 | 1 | SAM_2 | 354 | 413 | 1.8e-13 | 50.1 | 4.2e-07 | 0.00089 | 19.0 |
| pfu_aug1.0_2407.1_15798.t1 | 2 | 1 | SAM_1 | 354 | 413 | 1.1e-12 | 47.9 | 6.4e-09 | 1.3e-05 | 25.2 |
| pfu_aug1.0_2407.1_15798.t1 | 2 | 2 | SAM_2 | 423 | 480 | 1.8e-13 | 50.1 | 3.3e-10 | 7.0e-07 | 28.9 |
| pfu_aug1.0_2407.1_15798.t1 | 2 | 2 | SAM_1 | 424 | 472 | 1.1e-12 | 47.9 | 2.1e-07 | 0.00043 | 20.3 |
| pfu_aug1.0_2407.1_15798.t1 | 4 | 2 | Chitin_synth_2 | 879 | 911 | 8.0e-35 | 120.2 | 0.39 | 830.0 | -2.0 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 2 | Glycos_transf_2 | 889 | 939 | 6.4e-10 | 38.9 | 0.018 | 38.0 | 3.8 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 3 | Glycos_transf_2 | 1020 | 1107 | 6.4e-10 | 38.9 | 1.4e-06 | 0.0029 | 17.3 |
| pfu_aug1.0_2407.1_15798.t1 | 2 | 2 | Glyco_transf_21 | 1022 | 1095 | 8.2e-13 | 48.0 | 7.5e-06 | 0.016 | 14.5 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 2 | Glyco_tranf_2_3 | 1031 | 1090 | 7.0e-16 | 58.7 | 0.092 | 190.0 | 1.6 |
| pfu_aug1.0_2407.1_15798.t1 | 4 | 3 | Chitin_synth_2 | 1034 | 1094 | 8.0e-35 | 120.2 | 0.0006 | 1.3 | 7.3 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 2 | Glyco_trans_2_3 | 1036 | 1095 | 1.0e-22 | 80.8 | 0.0019 | 4.0 | 7.0 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 3 | Glyco_tranf_2_3 | 1095 | 1129 | 7.0e-16 | 58.7 | 8.4e-06 | 0.018 | 14.8 |
| pfu_aug1.0_2407.1_15798.t1 | 3 | 3 | Glyco_trans_2_3 | 1096 | 1167 | 1.0e-22 | 80.8 | 4.5e-08 | 9.6e-05 | 22.1 |
| pfu_aug1.0_2407.1_15798.t1 | 4 | 4 | Chitin_synth_2 | 1099 | 1178 | 8.0e-35 | 120.2 | 3.8e-09 | 8.1e-06 | 24.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2407.1_15798.t1 | gi|156385252|ref|XP_001633545.1| | predicted protein [Nematostella vectensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2407.1_15798.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2407.1_15798.t1 atggcacagttactcaggtcgatatgggctgttaatatagaacacaagagagctgaacaaagacttgatgaagagaatga aggaaaagggaacatatatggtaaacgagattttgagtctcatatcttccttgatggtgcagtgaggggaggggatatgc aggacaacgcattgcagctagtcagtttgcttaatgaatgtttagacaaagatgaagacttgtttattctgaccacggat gcagacgtcaagtttaagtttacagacgtccaagcattactagacctgatgatgcgtgatccaagtgtgggagctgtatg cgcgcgcacataccccctcggtggcggtccactggtgtggtatcaaaaatttgagtatgctataggacattggtttcaaa aggctgctgaacatgttcttggatcagttttgtgtgcgccaggatgcttcagtgtttacagatgttcggcattaagggac atagtaccaacatacgcttctgatgtagagagagcctttgagtttttgataaaggacatgggagaagacagatggctgtg tacacttatggtacagagtggatggagaatcgaatattgcgcagcatctacaaatgagacatactgtcccgaggagtttg acgagttcttcaagcagagaagacggtgggtggcctcaacattggctaatatctggaaggttatcaatgaatggaagtat atacgggcattcaaccacagggtttcctaccttttctgtatctatcagattttcctgtttatttcaaccatcgtcggacc aagcactgtcattatggtggtgtcaggaaagatcctaacgttcgtttatgcccttgttatgacggcggtagctgttggta tcgctaagactgtcgccattgactttgctacccacgaggaaatcaaactggcagagaactctacggaggaaatcaagtct accaaaagtccacaagttccggaggaggacatagaaactgaaatagagaccagctttagtcatcaacagccagatgattc agattacgttgagatacttactgtggatgaatggttagacgaggaagaattgagaagaaagtacagcgctaaattcaaag ccaacggctacgagaacacgatttttatttcaatgctgacagacagaactctgaggaaaattattggagtggatatttta gctcatagaaatcattttcttgaaaagatagacaaacttccgcaatacaaaatagagatcgacgtcccggaaaacgtaga atcatggcttgtgagcataggtcttgagaagtaccgaaagaatttcaaggatatcaagattgtatcatccaaacaactag agacgctgaaatcaatgaaagagcacgagttaagaaaagacctcaaaattactaaacacgaggagcgcagaataattcaa atcaaagatcagctgaagaatgcatacacacatgaactgtcgaaagttaacaaagaagaacataagttttgggcggacat catcaaggcctgtctggagccaaactctaatgcctttggacagttggcagagcttaagaaggatttagagaagctgcgtt ttaatgcactgatagtggctggtatagttaactgcctttggcttgtgctggctttgacccttgccggtagcgctgacttg accacggctggaacaaatcccctagtttgggtcaccataggacgtaaagacctgccaaggccaaaaacatcagcaataat ttactgcatcgttgccagtctattggaggtgatcggaattactctggtagcttgtgaagtcattgtaggtaacccagata tagaaaatacagtcatacttcttgttggtatctttcttgtctctatatcgtggatgccttggcttcaagagaaaatgatg gaaatcaaaatcgaacagccaatacaagaaattcctgaggaaattcctaaaggatcattcaggttggaacagtttgcaca aaataacagagtcacagatttacgagctatgcaaatatctgaaaacaattcccactggaggtcactgcgtatttcatcct tcatcaaacttatttctacgctgccagctatacttatttacgaaggaatcagtggtaggaacttttcgaacgttttcagt gattttaaagacggatggtcgagcagtgactggtctcctaacgtaatgcttttgtggtttttcgtctcgaacgtgcttac ggctgttctaggttatatggttgcagtatttgcctgcaggacttgtatggaccggggagcttttgtgttgcctcttttcc tttcgacacctttaacagtagcacttcttacggtttacgacccatgttctgtacttcttgaccatgttgataaaagcacg aactgtggcaatccaacagatgtaaaaacaatagcgcttatagcggcatcagtgttatgttttgccgtgtcacaggcgct ttctgtcggctttaatgcttttaagggttcatccataattctcgagaaagagactaagcttttccggttcgcctcattta acggagtgtttctagaacagtggctacttgtagataaaagacaagattttgaaggattggaccggaactctcaacaatcg caacacaagaaatccaaagtcttcatttgtactaccatgtataacgagaatcaaacggagatgaagcaattattagaatc tgtatacgccgtgaatgccgctcagatctctggcgatcagacgtcttgccattttgagtcccatatcttccttgacgggt caatcagagacgatgacttacaagagaacgctttacgcttacttagtcttctaccggaaagtctcggaatcgttgatttg agaaaaggaacaaagataataacaccatacggtatggcaatatcctggaaactcccgacaccgaatggtctcaatggaat gaactttactatccatttcaaagatattaggaaggtgaaaaacaagaagagatggagtcaaataatgtacatttcatatg tactggatttcctcaacaaaaacttcaagcaaggcacagattcgtcttcggaagatgacagtttcatactcacaactgat gcagacgttaggtttgaagctactgacgtagagactctcctggacttaatgacacgtgatcacacagtgggagcagtctg cgcacgcacctatcccttgggtagtggacctctcgtatggtatcaaaagttcgagtatgcaataggccattggttccaga aggtacaaagtggatggagaatagagtattgtgcggcctctcaaaataaaacttattgtcctgaagattttgatgagttc tttaaacaaagacgacgatggattgcatcgacaatggcaaatatctggaagctgatcgctgaatggtcatttatccacgg catgaatcacaaggtatccattctgttctgtatgtaccaaatattcctgttcgcctccaccatcgttggaccaagtacga tcatcatggtcgtttccgataagcttttcagtcaggaatacgtttgtgaccgactaaactcgtcactgaggaagttctac ggtcgatatggggaactcgtcatacattatgatgtcccactctccagaatggtggatgatattctgttttag |
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Protein
| Protein ID | pfu_aug1.0_2407.1_15798.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2407.1_15798.t1 MAQLLRSIWAVNIEHKRAEQRLDEENEGKGNIYGKRDFESHIFLDGAVRGGDMQDNALQLVSLLNECLDKDEDLFILTTD ADVKFKFTDVQALLDLMMRDPSVGAVCARTYPLGGGPLVWYQKFEYAIGHWFQKAAEHVLGSVLCAPGCFSVYRCSALRD IVPTYASDVERAFEFLIKDMGEDRWLCTLMVQSGWRIEYCAASTNETYCPEEFDEFFKQRRRWVASTLANIWKVINEWKY IRAFNHRVSYLFCIYQIFLFISTIVGPSTVIMVVSGKILTFVYALVMTAVAVGIAKTVAIDFATHEEIKLAENSTEEIKS TKSPQVPEEDIETEIETSFSHQQPDDSDYVEILTVDEWLDEEELRRKYSAKFKANGYENTIFISMLTDRTLRKIIGVDIL AHRNHFLEKIDKLPQYKIEIDVPENVESWLVSIGLEKYRKNFKDIKIVSSKQLETLKSMKEHELRKDLKITKHEERRIIQ IKDQLKNAYTHELSKVNKEEHKFWADIIKACLEPNSNAFGQLAELKKDLEKLRFNALIVAGIVNCLWLVLALTLAGSADL TTAGTNPLVWVTIGRKDLPRPKTSAIIYCIVASLLEVIGITLVACEVIVGNPDIENTVILLVGIFLVSISWMPWLQEKMM EIKIEQPIQEIPEEIPKGSFRLEQFAQNNRVTDLRAMQISENNSHWRSLRISSFIKLISTLPAILIYEGISGRNFSNVFS DFKDGWSSSDWSPNVMLLWFFVSNVLTAVLGYMVAVFACRTCMDRGAFVLPLFLSTPLTVALLTVYDPCSVLLDHVDKST NCGNPTDVKTIALIAASVLCFAVSQALSVGFNAFKGSSIILEKETKLFRFASFNGVFLEQWLLVDKRQDFEGLDRNSQQS QHKKSKVFICTTMYNENQTEMKQLLESVYAVNAAQISGDQTSCHFESHIFLDGSIRDDDLQENALRLLSLLPESLGIVDL RKGTKIITPYGMAISWKLPTPNGLNGMNFTIHFKDIRKVKNKKRWSQIMYISYVLDFLNKNFKQGTDSSSEDDSFILTTD ADVRFEATDVETLLDLMTRDHTVGAVCARTYPLGSGPLVWYQKFEYAIGHWFQKVQSGWRIEYCAASQNKTYCPEDFDEF FKQRRRWIASTMANIWKLIAEWSFIHGMNHKVSILFCMYQIFLFASTIVGPSTIIMVVSDKLFSQEYVCDRLNSSLRKFY GRYGELVIHYDVPLSRMVDDILF |
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