Gene
| Gene Model ID | pfu_aug1.0_2407.1_15799 |
|---|---|
| Locus | scaffold2407.1 : 66836 ... 74502 : + |
| To GenomeBrowser | scaffold2407.1:66836..74502 |
| Genes list of scaffold | scaffold2407.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2407.1_15799.t1 | 2 | 1 | SAM_2 | 96 | 150 | 1.0e-23 | 82.9 | 1.7e-13 | 8.3e-10 | 38.3 |
| pfu_aug1.0_2407.1_15799.t1 | 3 | 1 | SAM_1 | 97 | 156 | 9.5e-23 | 80.1 | 2.1e-11 | 1.0e-07 | 31.9 |
| pfu_aug1.0_2407.1_15799.t1 | 2 | 2 | SAM_2 | 168 | 231 | 1.0e-23 | 82.9 | 7.7e-15 | 3.8e-11 | 42.6 |
| pfu_aug1.0_2407.1_15799.t1 | 3 | 2 | SAM_1 | 168 | 231 | 9.5e-23 | 80.1 | 4.6e-16 | 2.3e-12 | 46.9 |
| pfu_aug1.0_2407.1_15799.t1 | 3 | 3 | SAM_1 | 248 | 262 | 9.5e-23 | 80.1 | 0.58 | 2900.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2407.1_15799.t1 | gi|260794929|ref|XP_002592459.1| | hypothetical protein BRAFLDRAFT_118918 [Branchiostoma floridae] | 5.0e-24 |
Transcript
| Transcript ID | pfu_aug1.0_2407.1_15799.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2407.1_15799.t1 atgataatggcggccgtggctgtaggtgtagcaattcaagtagctaatgactttgagaatccagacacaggtgaaacaga cgactacccagattaccctgatgaacccacagtctctactaaaaaacctgatgaaagtaaagaagagaccgaagttgaca ttttggaatcccaggaggtgattacggagacggcagaagtatggatcccatcaggttcacagaccttgagtggaaagaag ggaaccaaaaccattgttacacgacgaaaacctataaatgatgggagcaaatcagtagaagaatggttaaaggacaaaaa attgattgaacaatatgctgagcagttcaaggaacatggatacgagaacactctgttcttatctggaatggacgaaaaga ctctcacaaagaaaataggtgttaataagctagctcacaagatcaatttaatggggatgatagaccggataccaaacttt gacatcgatgttggagtaccgaacaatgtcggaacttggttggacaccataggactttggatgtataaaactaacttcga agcagcctccattaaaacccctgagagtttggaagctttgaaagatatgtccaaagaacagctaaaagaggaactcggca ttacaaaacacggtcaccgtaaacggttgctgattgcaatagataaacttaggtacccaacagaagatgaagaaacatat ttaatggtgagaaaaacggtttcggaaattgattggaagctgttaaaagatatcaataaagatgaacacaaattttggga agatcttatcaacgtttgcttagtaccgaatcgggatgcatttggaagaatatcagaactaaaaggtacattgtttactt aa |
|
Protein
| Protein ID | pfu_aug1.0_2407.1_15799.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2407.1_15799.t1 MIMAAVAVGVAIQVANDFENPDTGETDDYPDYPDEPTVSTKKPDESKEETEVDILESQEVITETAEVWIPSGSQTLSGKK GTKTIVTRRKPINDGSKSVEEWLKDKKLIEQYAEQFKEHGYENTLFLSGMDEKTLTKKIGVNKLAHKINLMGMIDRIPNF DIDVGVPNNVGTWLDTIGLWMYKTNFEAASIKTPESLEALKDMSKEQLKEELGITKHGHRKRLLIAIDKLRYPTEDEETY LMVRKTVSEIDWKLLKDINKDEHKFWEDLINVCLVPNRDAFGRISELKGTLFT |
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