Gene
| Gene Model ID | pfu_aug1.0_2408.1_15802 |
|---|---|
| Locus | scaffold2408.1 : 15379 ... 22925 : - |
| To GenomeBrowser | scaffold2408.1:15379..22925 |
| Genes list of scaffold | scaffold2408.1 |
| Synonym | pfu_aug2.0_1137.1_24712 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | tlx |
| Description | Best hit to T-cell leukemia homeobox protein (tlx), mRNA from various organisms |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2408.1_15802.t1 | 1 | 1 | Homeobox | 161 | 217 | 8.0e-21 | 73.4 | 2.7e-24 | 8.0e-21 | 73.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2408.1_15802.t1 | gi|146217159|gb|ABQ10643.1| | homeodomain protein Tlx [Platynereis dumerilii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2408.1_15802.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2408.1_15802.t1 atggacatgtctgacgtcgaggagactgagggcgacaaaaaagacgttcgaaatgagcagttgaggacaaaatttgaaat gaatagagaaaaacctaaattatcatttggaatgagcagaattctagacaaaagtgacgacgatgacgatgaggatgaat ctgatatagaaataaacgttcaagacgatgacatagaggctaaaagtgaaaaatcagccaatatttcaaaagagtcttct gataaaagcctttctcgacaatgtgttagtgtaccccagaattatcctacgggtctgtcaaccccgtttggactttgtag tttaccttcacactttgctgttcctgttcatagaccacaccctattttgccaatgctgacgtcatattctttgccggggt ggatcgacctgcgtagagacagatttggagttgctcggagaattggacacccataccagaacagaacgccaccgaaacgt aaaaaaccacgcacgtcattctcacgtttacaaataatggaactcgagaagaggtttcaccgacagaaatatctggcatc agcggagaggtccgccctggcaaaagcgctgaaaatgaccgacgctcaggtcaaaacttggtttcaaaataggaggacaa aatggaggcgtcagactgcagaggaacgggaggctgaacgccaagccgccaatcgtctcatgctaagccttcaaaacgag gctcacaaaacaatttatgacatccgggaccctctgtgtatgagcaactcttccttgcatgcactgcaaaatctacaacc atgggcagacgacaactcggacgatcaacagtga |
|
Protein
| Protein ID | pfu_aug1.0_2408.1_15802.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2408.1_15802.t1 MDMSDVEETEGDKKDVRNEQLRTKFEMNREKPKLSFGMSRILDKSDDDDDEDESDIEINVQDDDIEAKSEKSANISKESS DKSLSRQCVSVPQNYPTGLSTPFGLCSLPSHFAVPVHRPHPILPMLTSYSLPGWIDLRRDRFGVARRIGHPYQNRTPPKR KKPRTSFSRLQIMELEKRFHRQKYLASAERSALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQNE AHKTIYDIRDPLCMSNSSLHALQNLQPWADDNSDDQQ |
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