Gene
| Gene Model ID | pfu_aug1.0_24175.1_69619 |
|---|---|
| Locus | scaffold24175.1 : 21521 ... 22605 : - |
| To GenomeBrowser | scaffold24175.1:21521..22605 |
| Genes list of scaffold | scaffold24175.1 |
| Synonym | pfu_aug2.0_8176.1_22863 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-h |
| Description | Best hit to BAB83913 putative bHLH transcription factor [Homo sapiens] with 3e-12 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24175.1_69619.t1 | 1 | 1 | HLH | 11 | 58 | 5.0e-12 | 45.3 | 3.0e-15 | 7.4e-12 | 44.7 |
Transcript
| Transcript ID | pfu_aug1.0_24175.1_69619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24175.1_69619.t1 atgaaaaatgcagtaaaaggaacagacaaaagaaacgcaagggagaggaaaagagtaaaagggatcaatgagatgttgac tattctcaagcaaaaacttccagaagaatggaccagtaggaaaatgagcaagctggaaattctgaggaaatcggcgctgt atattcggcgactaagtcagatgacgcagacggaaacacaaaacgaagatttggcgtcaaccacatgtgcggcagcaaca acatcatcatcgacaccaatagcagcagacacagcctcaggaaaccagacgatccagtcagtgcagacgacatctttgaa agatgcaatggaattaacatttgatgttagtttccctgaaatgcagcatcaaaatgacgaaagctataccggtgtttcag catctgctagtatgacaagtgacagcgaaaagtacacagatgatgactttactttcagccttacagacgacgagttctct atcttggatgattcctttctgcttgatgatgaattgtga |
|
Protein
| Protein ID | pfu_aug1.0_24175.1_69619.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24175.1_69619.t1 MKNAVKGTDKRNARERKRVKGINEMLTILKQKLPEEWTSRKMSKLEILRKSALYIRRLSQMTQTETQNEDLASTTCAAAT TSSSTPIAADTASGNQTIQSVQTTSLKDAMELTFDVSFPEMQHQNDESYTGVSASASMTSDSEKYTDDDFTFSLTDDEFS ILDDSFLLDDEL |
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