Gene
| Gene Model ID | pfu_aug1.0_2418.1_58902 |
|---|---|
| Locus | scaffold2418.1 : 36195 ... 55235 : - |
| To GenomeBrowser | scaffold2418.1:36195..55235 |
| Genes list of scaffold | scaffold2418.1 |
| Synonym | pfu_aug2.0_1491.1_05086 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2418.1_58902.t1 | 1 | 1 | Neur_chan_LBD | 10 | 98 | 4.8e-12 | 45.4 | 9.5e-16 | 7.0e-12 | 44.9 |
| pfu_aug1.0_2418.1_58902.t1 | 2 | 1 | Neur_chan_memb | 106 | 201 | 5.0e-40 | 137.8 | 5.6e-38 | 4.2e-34 | 118.4 |
| pfu_aug1.0_2418.1_58902.t1 | 2 | 2 | Neur_chan_memb | 218 | 250 | 5.0e-40 | 137.8 | 6.5e-09 | 4.8e-05 | 23.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2418.1_58902.t1 | gi|56181507|gb|AAV83800.1| | glycine receptor alpha 1 variant [Rattus norvegicus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_2418.1_58902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58902.t1 atggacaaactcttatggaacttaatacagaagagagtgtcagggacgttttcttgctacatggacttaatgaagtatcc cttggactcacaaatatgtaacattacaatggagagctatggactgagtaccaacactatggtgttacgttggaacaccc cagcagtaactgtctctcccagtctagagttaccacagtttaacttgtcagaattccaccattttgtctgcgatgcccaa tatgctgcggtgaattttacctgcattggattcacattgcattttgaccgtaattacggctactacatgattcaagtata cattccaagcgtgcttatagtgatgttgtcatgggtttcattttggttaaacatcgatgcgactccagcaagaatttcat tgggactcctaacggtcctcaccatgacaacccaatcaacaggtgcgcgctcagaacttccaagagtttcctacattaaa gccatcgatatctggatggcgacatgcctctttttcgtttttgctgcactcattgaatttgcatatgtgaatgttctatc aagagtggaacaacgaagacttgccactataaaagacatggctcagctcatacataatggggaggaacccaaaaaatcca ggaagttctcattatggtcagcggagagtcgtcagagagcgagaacagttgataagatttcccgcgttttgtttccttgt attttcatattatttaatgtgatttactggctggtgtatcgcctttggaaaccagtcaaaggatga |
|
Protein
| Protein ID | pfu_aug1.0_2418.1_58902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58902.t1 MDKLLWNLIQKRVSGTFSCYMDLMKYPLDSQICNITMESYGLSTNTMVLRWNTPAVTVSPSLELPQFNLSEFHHFVCDAQ YAAVNFTCIGFTLHFDRNYGYYMIQVYIPSVLIVMLSWVSFWLNIDATPARISLGLLTVLTMTTQSTGARSELPRVSYIK AIDIWMATCLFFVFAALIEFAYVNVLSRVEQRRLATIKDMAQLIHNGEEPKKSRKFSLWSAESRQRARTVDKISRVLFPC IFILFNVIYWLVYRLWKPVKG |
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