Gene
| Gene Model ID | pfu_aug1.0_2418.1_58903 |
|---|---|
| Locus | scaffold2418.1 : 58256 ... 67347 : + |
| To GenomeBrowser | scaffold2418.1:58256..67347 |
| Genes list of scaffold | scaffold2418.1 |
| Synonym | pfu_aug2.0_1491.1_05087 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2418.1_58903.t1 | 3 | 1 | Ldl_recept_b | 283 | 306 | 1.4e-23 | 82.9 | 0.12 | 450.0 | 1.2 |
| pfu_aug1.0_2418.1_58903.t1 | 3 | 2 | Ldl_recept_b | 329 | 367 | 1.4e-23 | 82.9 | 4.7e-12 | 1.7e-08 | 34.6 |
| pfu_aug1.0_2418.1_58903.t1 | 3 | 3 | Ldl_recept_b | 370 | 410 | 1.4e-23 | 82.9 | 1.2e-15 | 4.5e-12 | 46.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2418.1_58903.t1 | gi|224050971|ref|XP_002199539.1| | PREDICTED: low-density lipoprotein receptor-related protein 5 [Taeniopygia guttata] | 6.0e-32 |
Transcript
| Transcript ID | pfu_aug1.0_2418.1_58903.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58903.t1 atgacaacctactttgtaaaagaaaagtccgattctgaaaataagtatacggaaacagatattattcagatgttaaaatt cctgatcgacaagatttttgttgtgtttggagtaaaggtcttccagcgaattgtcggaattccaatggggatcaattgtg ccccactcattgccgacatttttctttactcgtacgaagctgaattcattcaatctttggtctctgaagggaaaagatac ttagcatctgacttcaacttcacttacagatacatagacgatgtgtcgtccatcaataatccaaaattcgcagattacct cagcagaatctatccttcggagcttgaagtcaaagaaactacagagacaaataattcagcatcctatttggacataatgt tgtcctacgatactgatgatcacatgtacatatcactctatgacaaacgtgacgatttcattttcagcatcacaaacttt ccttttctgagtagcaacattccttcatcgcctgctatctcagttgatgcgctatgccagagcaaccttacaaaattgtt tcgaatgtcacaatatcggcgatccttcacagtgtaccaggactgtcacgtgcaaatcgaacgagatatgctacacccac gaaagaactgttcaaggatttttattcagcaccgcaaaggtgtacgacatgggttgccgaaatactgtccgagtagcgag gataacatcatatttttggtggataatggtattttggtaaggatggacctcaatacacataattttgtaccgatacctat aagtgatatccatagacctgtcgccattgattatgaccccacggagggaaggatttatttcctagattatgcattgaagc agatcgatagcgtccattacagtggaatagatgttcgtgaattgaaacagatggatgataacgcagaccttgaaagaata gcagttgaccccacaaatcggatcttatttttcactgaccgcggaaatgatatcattggatcaataaatctggatggaac tggttataaagtagtaattaacacgaacttagacgagccacgagatattgttgtggatccacgtaacaggaatatttatt ggacggattggggaagctctccgaaaattgagaagagttcgtatgacggttctaatcgacaaaccattgttggatcagct ttaaagtggcctaatggaatagcattggattttgatgacaataaatcatttaaatcacgggcatgtagcgacatgtgtaa tgccttgtccttcctctcggacaatatttatgttagatttggggaggatcttttcattcagcctgcattttatggtgaca tgataaacaaaattagaaggatcaaaggcagacaggataactatcgaaaatgcgtcagaatcatcaaacgccttttatac cgtggatatgatcctaatgtcaccagtcggacattcggtatggtaatggaccaatctacatccttgtaccagcgcatcct taagactcgcactctgaccgactgtgacgacggaactccataa |
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Protein
| Protein ID | pfu_aug1.0_2418.1_58903.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58903.t1 MTTYFVKEKSDSENKYTETDIIQMLKFLIDKIFVVFGVKVFQRIVGIPMGINCAPLIADIFLYSYEAEFIQSLVSEGKRY LASDFNFTYRYIDDVSSINNPKFADYLSRIYPSELEVKETTETNNSASYLDIMLSYDTDDHMYISLYDKRDDFIFSITNF PFLSSNIPSSPAISVDALCQSNLTKLFRMSQYRRSFTVYQDCHVQIERDMLHPRKNCSRIFIQHRKGVRHGLPKYCPSSE DNIIFLVDNGILVRMDLNTHNFVPIPISDIHRPVAIDYDPTEGRIYFLDYALKQIDSVHYSGIDVRELKQMDDNADLERI AVDPTNRILFFTDRGNDIIGSINLDGTGYKVVINTNLDEPRDIVVDPRNRNIYWTDWGSSPKIEKSSYDGSNRQTIVGSA LKWPNGIALDFDDNKSFKSRACSDMCNALSFLSDNIYVRFGEDLFIQPAFYGDMINKIRRIKGRQDNYRKCVRIIKRLLY RGYDPNVTSRTFGMVMDQSTSLYQRILKTRTLTDCDDGTP |
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