Gene
| Gene Model ID | pfu_aug1.0_2418.1_58904 |
|---|---|
| Locus | scaffold2418.1 : 68856 ... 72098 : + |
| To GenomeBrowser | scaffold2418.1:68856..72098 |
| Genes list of scaffold | scaffold2418.1 |
| Synonym | pfu_aug2.0_2905.1_18963 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2418.1_58904.t1 | 1 | 1 | SRCR | 2 | 64 | 3.5e-10 | 40.1 | 2.8e-13 | 5.9e-10 | 39.3 |
| pfu_aug1.0_2418.1_58904.t1 | 4 | 1 | Ldl_recept_b | 79 | 119 | 2.3e-24 | 85.4 | 7.8e-12 | 1.7e-08 | 34.6 |
| pfu_aug1.0_2418.1_58904.t1 | 4 | 2 | Ldl_recept_b | 124 | 162 | 2.3e-24 | 85.4 | 4.7e-11 | 9.9e-08 | 32.1 |
| pfu_aug1.0_2418.1_58904.t1 | 4 | 3 | Ldl_recept_b | 167 | 198 | 2.3e-24 | 85.4 | 7.8e-06 | 0.017 | 15.4 |
| pfu_aug1.0_2418.1_58904.t1 | 4 | 4 | Ldl_recept_b | 207 | 215 | 2.3e-24 | 85.4 | 0.08 | 170.0 | 2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2418.1_58904.t1 | gi|348523555|ref|XP_003449289.1| | 9.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2418.1_58904.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58904.t1 atgctgggttacccaagagctaattcggtcgcagttgccgaaagcaaatacggaacagaccagtcagtgctcatattcct tgatgacgtcaactgtactggtagtgaggaccatatagcaagctgcacccgacctgagaactggggcgtacataactgtg gtcataacgaagacgccggggtcaggtgtaacttccgttcaataccggatggtatgaatcttgatgtgacaaatcgactt atattttactctgatgccggaagtgacatcattgccaaaatgtcgatggatggatcaaacgaacagactatcgtaaactc gaatctagaccagccaagggctatagcattagatgaaacaaacaggatcgtatattggacagattggggttctaatccaa aaatagaaaaggctaattatgacggaacaggtaggtcggtcatagccgactcaaatctgaaattccccaacggcctagtg tatgatccatcaaccaactctctgtttttctgtgatgctggtactaacatgattgaacaaataaacactgacggcagcgg acgtaagatgttgtttacagatatcggcgctcacttttttggcgttgacgttgattcacaatatgtgtacttttcagact ggaataaggagtaa |
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Protein
| Protein ID | pfu_aug1.0_2418.1_58904.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2418.1_58904.t1 MLGYPRANSVAVAESKYGTDQSVLIFLDDVNCTGSEDHIASCTRPENWGVHNCGHNEDAGVRCNFRSIPDGMNLDVTNRL IFYSDAGSDIIAKMSMDGSNEQTIVNSNLDQPRAIALDETNRIVYWTDWGSNPKIEKANYDGTGRSVIADSNLKFPNGLV YDPSTNSLFFCDAGTNMIEQINTDGSGRKMLFTDIGAHFFGVDVDSQYVYFSDWNKE |
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