Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_2418.1_58905
Locus scaffold2418.1 : 72379 ... 84385 : -
To GenomeBrowser scaffold2418.1:72379..84385
Genes list of scaffold scaffold2418.1
Synonym pfu_aug2.0_2905.1_18964

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_2418.1_58905.t1 2 1 EGF 45 73 1.8e-17 62.9 1.2e-09 2.6e-06 27.2
pfu_aug1.0_2418.1_58905.t1 2 1 EGF_2 45 77 3.7e-09 36.5 2.0e-06 0.0043 17.1
pfu_aug1.0_2418.1_58905.t1 2 2 EGF 83 111 1.8e-17 62.9 4.4e-14 9.4e-11 41.4
pfu_aug1.0_2418.1_58905.t1 2 2 EGF_2 87 114 3.7e-09 36.5 6.1e-09 1.3e-05 25.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_2418.1_58905.t1 gi|327280186|ref|XP_003224834.1| 2.0e-14

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-Dshape 2
>Adult tissues
Dshape 1

Transcript
Transcript IDpfu_aug1.0_2418.1_58905.t1
Definition-
>pfu_aug1.0_2418.1_58905.t1
atgcagatacctgcatcaacggaaaactatagattcatttcttataattttattatcatctacttgtggaaaacagacta
ttttttggatctacaaataataaatcaccgcactatatttcatgttgataattgtccaccttctaacccctgtcaacata
acggtacatgtatggatttatacagacgttacacatgtaaatgcccacacggatacaaaccactggattgttcacacaag
gtaacttgtgctgattttccatgtaaaaacaatggaacatgtgtggacactggtactatgtacatatgtgtttgtccaaa
aggattcactggcttagactgcgaaacgaaactccatataaatgtcgataattcgaattccaacgtacttcctatagttt
tgggtgttataactggtgctggaatagttgccatgacgactgcatgctgctgttggtggtttttactcgctggaaaaaga
ccgaggtcaagggaacgaaaggtcaaaccaaaggaactacccgaaaatggactcgatactctataa

Protein
Protein IDpfu_aug1.0_2418.1_58905.t1
Definition-
>pfu_aug1.0_2418.1_58905.t1
MQIPASTENYRFISYNFIIIYLWKTDYFLDLQIINHRTIFHVDNCPPSNPCQHNGTCMDLYRRYTCKCPHGYKPLDCSHK
VTCADFPCKNNGTCVDTGTMYICVCPKGFTGLDCETKLHINVDNSNSNVLPIVLGVITGAGIVAMTTACCCWWFLLAGKR
PRSRERKVKPKELPENGLDTL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495