Gene
| Gene Model ID | pfu_aug1.0_24266.1_33421 |
|---|---|
| Locus | scaffold24266.1 : 11545 ... 27975 : - |
| To GenomeBrowser | scaffold24266.1:11545..27975 |
| Genes list of scaffold | scaffold24266.1 |
| Synonym | pfu_aug2.0_663.1_11058 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | shematrin-1 |
| Description | reciprocal BLASTN hit to NCBI Accession AB244419 |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24266.1_33421.t1 | gi|93102299|dbj|BAE93433.1| | shematrin-1 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 4 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_24266.1_33421.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24266.1_33421.t1 atgttcctccacaatgggaacaggaattcacgcgaatatgaagtgaacgcgctgcgaatggaggagaatgcatatatgct gcgattcatcgccgtcgtcgctcttgtagcctcggtcaatgccggaggctcatattatggtggtggaagcgtaggcgttc ttccaagtgtcacctattacggaggaggaggtggttactatgggggaggtggttactatgggggtggtggttactatggg ggaggatttcccggcttagttggcggtttcggccctggaggtgtttatggtagcatcaattccttcggtggagtaggaac aagcgcctatggactttatggaacctcgccagcagtaagaggtgcagcccaaggtgctgccgctctcagcgctctcggtg ttgcttccggagtaccaagcagagtctctggtgtatctgtaggaaccggaggtggacaggccgtagttgctggaagcgct agaccaatcggtggttatggatattcctatggatacccaggatattcatatggattcccaggatatggatatggtggata tggcggatatggcggatatggaggatatggtggatacggatatcccgatgttgcaactttcggaggacatacgtacggaa atatcgccactggatccatctcatcatcagtttccggtaacattccatatggtggagttcttggaatcggaggttatgga ataggtctcggaggttatggaggatacggattaggaggatatggaggatacggattaggaggatatggaggatacggatt aggaggatatggaggatacggattaggaggatatggaggatacttccctagttacggaagctcattatacggtgtgtccc aatcttatccttttggaaacgcagtattcagtggtcaagcctctggtgctggtgttcccctatttggatcatataacttt ggaggcgttggagtaggctacccaggtggttattacggaggaggtggtctcatcggaggaggtggtatcatcggaggcgg tggtggtgtaattggaggtggtggagttaccgttattagaaagaagaagtattaa |
|
Protein
| Protein ID | pfu_aug1.0_24266.1_33421.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24266.1_33421.t1 MFLHNGNRNSREYEVNALRMEENAYMLRFIAVVALVASVNAGGSYYGGGSVGVLPSVTYYGGGGGYYGGGGYYGGGGYYG GGFPGLVGGFGPGGVYGSINSFGGVGTSAYGLYGTSPAVRGAAQGAAALSALGVASGVPSRVSGVSVGTGGGQAVVAGSA RPIGGYGYSYGYPGYSYGFPGYGYGGYGGYGGYGGYGGYGYPDVATFGGHTYGNIATGSISSSVSGNIPYGGVLGIGGYG IGLGGYGGYGLGGYGGYGLGGYGGYGLGGYGGYGLGGYGGYFPSYGSSLYGVSQSYPFGNAVFSGQASGAGVPLFGSYNF GGVGVGYPGGYYGGGGLIGGGGIIGGGGGVIGGGGVTVIRKKKY |
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