Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_243.1_58032
Locus scaffold243.1 : 13136 ... 22812 : +
To GenomeBrowser scaffold243.1:13136..22812
Genes list of scaffold scaffold243.1
Synonym pfu_aug2.0_375.1_17349

Manual annotation
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
egg-Dshape 1
trochophore 1
>Adult tissues
Dshape 2
mantle 1

Transcript
Transcript IDpfu_aug1.0_243.1_58032.t1
Definition-
>pfu_aug1.0_243.1_58032.t1
atggcgatactcaggtgtgtgttgaccacggtggccgtggctttgtttgccacttggtgcggtggactgactgttttcga
atggatgcagagagataacttcgatgaaatcatggaccgcttctcagaggtaaccgccgaaaattgccgttcaaaacctc
gggaagaactcgagtttccagaggacactgtggcacagaaacctgtatataatatgctgttaacgtctgtgatatactct
aacagatcacaattgttacatcttcataatatggccctaaatcgggcctttttctacagcttcatttttcagagactgaa
tcattcgggggactttgtgtatcagcccggtttgatgtacctttatatgtctagcaccgccgacattacggggagtgaag
gctttattaacggttctgctatagtatttgacaataattgttactatccaaactggtatttaaaaaatgtcgttgatttt
aatcgaacgcttccccgttttgggccccgcgcatggcgggaggacgactacgctgaaacaacgaactggttacgagagcc
cacaaataggactgtagatatccatgactatggggccgggaggtccgcggactatactagccaggcctacaaatatgctc
cctggtactcattatggatgcccgacacggaggggacccaggattccctcactaaatacacatacactgttggtgtcaag
ttttccaatcagacgggcaaatttgtcagagatgaatttgagaacattggtttctttggtcccccacaaccggcccagac
tgatacagaattgacactgccagtaaaatggaccaagccctactttgattgtggacggtctaacaagtggattgtgacag
catcagcacctgttgtggagtatatgcccagatactcgccatttattcatcttaggagaccaagccgagttgtttctact
aaaacggagaaaatgggaggggtatttgacacgaaaatgatgggatttttaccattaaatgaggactggacttcatctaa
catccgaaatgagattcgatacattttacaacattgtgaagtattgcacggatatggtttccagagaggcgggtaccagt
gcgtgtgtaagcctgggtattactacccatggtggcatgacggacctttcctgggtatggagattgaacaagctactgat
accgaataccaggcctccttcgattgcctcagtgtcgaacaacgtcttgtaattccaaacgagatgccaacatacgtaga
acgaaggaagaggaggtcagtggacccgtatacaaacaaggacaaattcctgggatcagtgcttacagagaaagaaagtc
ctaggatccgactcagggcaaaacgaagtgtcatgtcgaaagtaaagccactcaagatgacccacaaacttgttgccaag
cgggctgtggactccaccactatgaagaatcggctgaaaagaaggaccttctaccctcgtttccaaggggaaatgaaaca
catgcggcataagcgcgaattgttcgaccagggcatgtacgatcgtatgcagaggattctgcaaagaaaggaaaatacga
acaaagggaactgtcgccagaaaccagactttgaattatttttaccaggggatgctggttacaacatggagaaagcattc
gaagctgaaggccgaacagcgctgagattggcccatttcttatgcgactttctgcagaatgtcgatgagtatgaggaatt
tggcagcatgaagggtgacaagaggctgaacgagacccatatatttggagaggtgttggccaacgtgatgagtaattaca
aaatcgtcggcagtggagtattcttcgatcgttataagttccggatgtctccgccggaaaacaatacagatcccagatat
gtcaagggtatcacccgagagtttttcggtccgtacgcttggcgtattacgaccaccggtgacggactcgataccttcaa
atctatggattttgctggaatgaagaactactacactgatgaaagttggtaccgaaacatgaaggcgagatggcagacta
attttatggccctgaagcagtatacggcgaaacccatgattcgttcagatcctaacgggaccagcttggttagatgggaa
cactatcccctcagatactacgctcctaaatacgaacatggagaatggctccgtccggaattcaaatgccggaacaggaa
gtacgacacttacgttgccgagaacgagtggatagacgattgggtggtgacctatgtggttcctttctttggtacgaacg
atctcaagacgaggcttgaattccatggtgtgattacagtggacgtgaagttagactacctagagataaatcaatgtcct
ggtgatttctctgttgccaacgcattcaaaaataccgctaggtgtcactacaagtcacaatattgcgtgcccctccccat
tcagatccccacaaaccgattccaaacgggaggatacaagtgcgaatgtagacaaggatacgaatatcccttcaatgacc
tcggattcttctttgatggtcagatgatggaaatagagtacgcaaagatgatggcgggaaatccgaacaggtacgagacg
ctgagatgtaggatagccggagcggcgtctctgaccggaagttgggtactcacggtgcttacgtcattgcttctctatat
gtggaacaaacactag

Protein
Protein IDpfu_aug1.0_243.1_58032.t1
Definition-
>pfu_aug1.0_243.1_58032.t1
MAILRCVLTTVAVALFATWCGGLTVFEWMQRDNFDEIMDRFSEVTAENCRSKPREELEFPEDTVAQKPVYNMLLTSVIYS
NRSQLLHLHNMALNRAFFYSFIFQRLNHSGDFVYQPGLMYLYMSSTADITGSEGFINGSAIVFDNNCYYPNWYLKNVVDF
NRTLPRFGPRAWREDDYAETTNWLREPTNRTVDIHDYGAGRSADYTSQAYKYAPWYSLWMPDTEGTQDSLTKYTYTVGVK
FSNQTGKFVRDEFENIGFFGPPQPAQTDTELTLPVKWTKPYFDCGRSNKWIVTASAPVVEYMPRYSPFIHLRRPSRVVST
KTEKMGGVFDTKMMGFLPLNEDWTSSNIRNEIRYILQHCEVLHGYGFQRGGYQCVCKPGYYYPWWHDGPFLGMEIEQATD
TEYQASFDCLSVEQRLVIPNEMPTYVERRKRRSVDPYTNKDKFLGSVLTEKESPRIRLRAKRSVMSKVKPLKMTHKLVAK
RAVDSTTMKNRLKRRTFYPRFQGEMKHMRHKRELFDQGMYDRMQRILQRKENTNKGNCRQKPDFELFLPGDAGYNMEKAF
EAEGRTALRLAHFLCDFLQNVDEYEEFGSMKGDKRLNETHIFGEVLANVMSNYKIVGSGVFFDRYKFRMSPPENNTDPRY
VKGITREFFGPYAWRITTTGDGLDTFKSMDFAGMKNYYTDESWYRNMKARWQTNFMALKQYTAKPMIRSDPNGTSLVRWE
HYPLRYYAPKYEHGEWLRPEFKCRNRKYDTYVAENEWIDDWVVTYVVPFFGTNDLKTRLEFHGVITVDVKLDYLEINQCP
GDFSVANAFKNTARCHYKSQYCVPLPIQIPTNRFQTGGYKCECRQGYEYPFNDLGFFFDGQMMEIEYAKMMAGNPNRYET
LRCRIAGAASLTGSWVLTVLTSLLLYMWNKH

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495