Gene
| Gene Model ID | pfu_aug1.0_243.1_58034 |
|---|---|
| Locus | scaffold243.1 : 26209 ... 42945 : - |
| To GenomeBrowser | scaffold243.1:26209..42945 |
| Genes list of scaffold | scaffold243.1 |
| Synonym | pfu_aug2.0_375.1_17351 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_243.1_58034.t1 | 1 | 1 | E1_dh | 141 | 432 | 0.0 | 394.9 | 0.0 | 0.0 | 394.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_243.1_58034.t1 | gi|348561281|ref|XP_003466441.1| | PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform 1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 2 |
| >Adult tissues | |
| adductorMuscle | 2 |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_243.1_58034.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_243.1_58034.t1 atgaataactcagaaaaggaaagtaatgctgaaattgaagtcgtcacgtttgtcatagatttctttgacttcaagctccg aaggataaatactgctcaggtaatccgcgaatttaggattattgatggacaacacatcatctatgtatctgtaggccatt ccgagaaattcaaggctggggatcgaccaatatctccaaccattacccgtttaaatgttcgtaaaactgcgcatttgacc gagttttatcgtgatcgcaatcatcgtacgtcacagttccttggtattgctcaaagtggaaaatactcaacagctgcaga tgcaacatttaacataaaggaatgtgatctacataggcttgagaagggacctccagctacaacaacatgtacacgagagg atgccctcaaattctacagagaaatgtctatgataagaaggatggagaccacggcagctaacctgtacaaatccaagcaa atcagaggattctgtcatctctactcaggacaggaagcatgctgtgttggaatggaggcagcaataactaaggatgattc tgtgataacagcctatagagctcatggctggacttatatcagaggtgttagtgtgttgggggtactagcagagctcacag gtaaatcgtctggttgtgcaataggaaaaggaggatctatgcacatgtactgcaaaaacttctatggaggaaatggtata gtgggagcccaggtaccccttggagctggtatagcatttgcaataaagtaccgtggggagcctaatgtatgcataacatt gtacggtgatggtgcagctaaccagggtcaggtgttcgaggctttcaacatggcaaagctatggaacctaccatgtatat ttgtctgtgagaacaatggatatggtatgggaaccagtgcagacagagcatcggcatgtatagattattataccagggga gattatgtaccaggaatgagggttgatggaatggatgtgttagctgtcagagaggccactaagtttgctaaggattacgt ccttactaatggacctatcttactagagacagccacttaccgctaccatggacatagtatgagtgatcctggaacgagct accgcaccagagaagaaattcaacagaagagggagaagtttgatcccatttcaacattcaaacagaaaattgtcacagca aacttagttactgcagatgaaataaagaaaattgaagctgaagttcgaaaagaagtagacgaggcagcagaaagagctaa gacggaccctgagattcctctgaaggaactgtataaccaaatatattaccaacccccgaaggactatcatgttagaggct gtgacattacaatccaagcaccatcatcgtga |
|
Protein
| Protein ID | pfu_aug1.0_243.1_58034.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_243.1_58034.t1 MNNSEKESNAEIEVVTFVIDFFDFKLRRINTAQVIREFRIIDGQHIIYVSVGHSEKFKAGDRPISPTITRLNVRKTAHLT EFYRDRNHRTSQFLGIAQSGKYSTAADATFNIKECDLHRLEKGPPATTTCTREDALKFYREMSMIRRMETTAANLYKSKQ IRGFCHLYSGQEACCVGMEAAITKDDSVITAYRAHGWTYIRGVSVLGVLAELTGKSSGCAIGKGGSMHMYCKNFYGGNGI VGAQVPLGAGIAFAIKYRGEPNVCITLYGDGAANQGQVFEAFNMAKLWNLPCIFVCENNGYGMGTSADRASACIDYYTRG DYVPGMRVDGMDVLAVREATKFAKDYVLTNGPILLETATYRYHGHSMSDPGTSYRTREEIQQKREKFDPISTFKQKIVTA NLVTADEIKKIEAEVRKEVDEAAERAKTDPEIPLKELYNQIYYQPPKDYHVRGCDITIQAPSS |
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