Gene
| Gene Model ID | pfu_aug1.0_2441.1_37270 |
|---|---|
| Locus | scaffold2441.1 : 40853 ... 47467 : - |
| To GenomeBrowser | scaffold2441.1:40853..47467 |
| Genes list of scaffold | scaffold2441.1 |
| Synonym | pfu_aug2.0_35.1_16751 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2441.1_37270.t1 | 2 | 1 | RRM_1 | 7 | 46 | 1.6e-11 | 43.6 | 6.4e-05 | 0.32 | 10.6 |
| pfu_aug1.0_2441.1_37270.t1 | 2 | 1 | RRM_5 | 16 | 36 | 5.1e-06 | 26.2 | 0.014 | 70.0 | 3.3 |
| pfu_aug1.0_2441.1_37270.t1 | 2 | 2 | RRM_1 | 69 | 137 | 1.6e-11 | 43.6 | 3.4e-11 | 1.7e-07 | 30.7 |
| pfu_aug1.0_2441.1_37270.t1 | 2 | 2 | RRM_5 | 105 | 142 | 5.1e-06 | 26.2 | 6.9e-08 | 0.00034 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2441.1_37270.t1 | gi|328716359|ref|XP_003245909.1| | PREDICTED: ribonucleoprotein PTB-binding 1-like isoform X2 [Acyrthosiphon pisum] | 3.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_2441.1_37270.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2441.1_37270.t1 atgaaaatgattatttatagtttgatgatggattctctaacaggttcaaaaagatggtatggttttgttgaatttgatgg atccgtagatgaagtgaaatctatacagaaggaacttgactggcgagaaacagggggacttaaagtacactgtgacattg ttaatccagagcttgtaaaataccggcaacttaactcaaagtgtttattcattgataatttaccaaaggactattgtgat gtagcagatttcagggaatttttcagctgccattcaagacctttatactgccaaattgtgatgaaggatggtgagtccct gggttacggtattatacagtacaagacatggcaagaagctgagaagtcagaacaaactcttaacggtcgtaaaataaaca acgtagcgatccgtataacgtactgtataccaggcatgtcagcggtggctatctgtacacggataatgaataaatacgtc aggtggtcagtaaacttaatggaccttctatggcagcatctggaaagtgctgaacctgatgatggtacatcgattcttgg ggatcccttatcagcacaggccaacattatactgcaaaacttggtatctcagctggtacccagcgacgctgatgcatcgg agaaggccagcccgcagaaactgatggagaaaagtgtatcgtcaatgttacagactctatccaaagacatacagagtata aacttacacagcttggctagtctgggacgtctggctctacaactcaatactggacagtctcagccatcaggtgtgttagg cagtgacccccagtccaacgggaattcaggactgctgagtctaatgagtcttaatgtacaaaagtactctggtgcagatg gacttttaggggctgcaccgaaaaatgtggcaccgaacactggtcagaacttccttcataatctgaacatgttttcacgt gagaaaggactgttacagagtacgggcggactggcctctatactggagaagataaaccagagtaacggaggaagctcctt attaggggaacccccaccagaggttaaaaactggttgattaataggacatcaggagcgggggcaggtatgggagaagact ctgatacttatccaagcagcttcagaagtgggggtgtaaaaaagaaacttgatagctcatactcaagcccattcgatcag agcaataaataccaggatattgctagccaagcagctttatatgccgctagtaagacatatggtaactatggctacggtaa ctacggcagctctcaggattacggcagctacagcagcatgtaccgaggtcaaggtcaggaggattccttcagcagcagca gcggctataacacatccaggaattatgatgactcctatagcatagggaggggaagcttgtcagagagtggctcctacaaa atagggaggggaagcttgtcagagagtggctcctacaacatagggaggggaagcttgtcagagagtggctcctacaacat agggaggggaagcttgtcagagagtggctcctacaacatgggcaggggcagcttgtcagagagtggctacaaattcactc ccaatcctcctaaatttgattttagctccacacctaaacctccacagcatttagggatggggatgatgtcagcaggtaga agctactcaagttctggatctggcagcaatcaggtaaagtcatacattttcatatag |
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Protein
| Protein ID | pfu_aug1.0_2441.1_37270.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2441.1_37270.t1 MKMIIYSLMMDSLTGSKRWYGFVEFDGSVDEVKSIQKELDWRETGGLKVHCDIVNPELVKYRQLNSKCLFIDNLPKDYCD VADFREFFSCHSRPLYCQIVMKDGESLGYGIIQYKTWQEAEKSEQTLNGRKINNVAIRITYCIPGMSAVAICTRIMNKYV RWSVNLMDLLWQHLESAEPDDGTSILGDPLSAQANIILQNLVSQLVPSDADASEKASPQKLMEKSVSSMLQTLSKDIQSI NLHSLASLGRLALQLNTGQSQPSGVLGSDPQSNGNSGLLSLMSLNVQKYSGADGLLGAAPKNVAPNTGQNFLHNLNMFSR EKGLLQSTGGLASILEKINQSNGGSSLLGEPPPEVKNWLINRTSGAGAGMGEDSDTYPSSFRSGGVKKKLDSSYSSPFDQ SNKYQDIASQAALYAASKTYGNYGYGNYGSSQDYGSYSSMYRGQGQEDSFSSSSGYNTSRNYDDSYSIGRGSLSESGSYK IGRGSLSESGSYNIGRGSLSESGSYNIGRGSLSESGSYNMGRGSLSESGYKFTPNPPKFDFSSTPKPPQHLGMGMMSAGR SYSSSGSGSNQVKSYIFI |
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