Gene
| Gene Model ID | pfu_aug1.0_24452.1_33434 |
|---|---|
| Locus | scaffold24452.1 : 3986 ... 13930 : + |
| To GenomeBrowser | scaffold24452.1:3986..13930 |
| Genes list of scaffold | scaffold24452.1 |
| Synonym | pfu_aug2.0_16773.1_13222 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715607 (MgC1q28). 85 bits, 2e-14 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24452.1_33434.t1 | 1 | 1 | C1q | 224 | 343 | 2.6e-19 | 69.4 | 2.6e-22 | 5.6e-19 | 68.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24452.1_33434.t1 | gi|325504355|emb|CBX41677.1| | putative C1q domain containing protein MgC1q28 [Mytilus galloprovincialis] | 2.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_24452.1_33434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24452.1_33434.t1 atgaacgagtcagatccaagaatcaggaatgggtcatctaatacaagcatggcgtactttagggttcctctgctaaagaa gatatttttcgtcagctacgtggccctccattgtctcataagaaatctaacgacgatcattgtgataatttgccgacact tgcaccgaaagcgtccttttttgtgtactatacgttggactcggcagacatctgaaattgtctcaaaaactgaattaaat catgaaataaggaaaatctacgagaagttggagatacttgatgagctgtggaaagaaaataaaattttgaaagaaaatat tcagagtttgcataaggagaatatggagtttcaagacgcaatcgtgacgcttgaatctgacgtggacaagttaagaaagg agatactggaactgaattctaaaggaacagtacataacagtttgaattcaaaaatcgaagaaaacccaaatgctgaattt ttcaatgctacagagcagagacgtatgtcaaagtctgtacataaagcgaagtcagataacgatgacgacaaacacaggaa atcagattacgaagacaatgaacacacgagcagttcattggagaaagttcgtcgagggatagtgacgtctaatcaaaaca gcatcggtttccttgcttacaacccaaaccatcaacaaaatctgggtattcaccagacagttgagttccctattgctcta acaaatataggatctgcctataatccttcaagtagcatctttagagctcctgtagacggtctttactttttctctgtgac gatattgagttttgttggcgaggacatggaggtagagatagtacataatggtatcggcatggcgtacacgtactcaggag gggaatcaatgcatggctctggatcaacatcagctgtactcaaacttcatgccaacgacgatgtctggataaggattttg attcaaaaaagtgtaaataatggtaacattaaagtgtacggaaacaaatggtcgtcattctgtggctttaagatcgttta a |
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Protein
| Protein ID | pfu_aug1.0_24452.1_33434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24452.1_33434.t1 MNESDPRIRNGSSNTSMAYFRVPLLKKIFFVSYVALHCLIRNLTTIIVIICRHLHRKRPFLCTIRWTRQTSEIVSKTELN HEIRKIYEKLEILDELWKENKILKENIQSLHKENMEFQDAIVTLESDVDKLRKEILELNSKGTVHNSLNSKIEENPNAEF FNATEQRRMSKSVHKAKSDNDDDKHRKSDYEDNEHTSSSLEKVRRGIVTSNQNSIGFLAYNPNHQQNLGIHQTVEFPIAL TNIGSAYNPSSSIFRAPVDGLYFFSVTILSFVGEDMEVEIVHNGIGMAYTYSGGESMHGSGSTSAVLKLHANDDVWIRIL IQKSVNNGNIKVYGNKWSSFCGFKIV |
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