Gene
| Gene Model ID | pfu_aug1.0_24452.1_33435 |
|---|---|
| Locus | scaffold24452.1 : 23704 ... 29955 : - |
| To GenomeBrowser | scaffold24452.1:23704..29955 |
| Genes list of scaffold | scaffold24452.1 |
| Synonym | pfu_aug2.0_2438.1_28811 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24452.1_33435.t1 | 3 | 1 | zf-B_box | 10 | 38 | 2.1e-06 | 27.5 | 0.55 | 1200.0 | -0.5 |
| pfu_aug1.0_24452.1_33435.t1 | 3 | 1 | zf-RING_2 | 12 | 60 | 4.5e-09 | 35.9 | 2.1e-12 | 4.5e-09 | 35.9 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 1 | zf-RING_5 | 12 | 60 | 3.9e-06 | 26.4 | 1.8e-09 | 3.9e-06 | 26.4 |
| pfu_aug1.0_24452.1_33435.t1 | 1 | 1 | zf-C3HC4 | 13 | 59 | 5.0e-08 | 32.4 | 2.4e-11 | 5.0e-08 | 32.4 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 1 | zf-C3HC4_2 | 13 | 59 | 2.1e-07 | 30.8 | 9.7e-11 | 2.1e-07 | 30.8 |
| pfu_aug1.0_24452.1_33435.t1 | 1 | 1 | zf-RING_UBOX | 13 | 57 | 2.6e-07 | 30.2 | 1.2e-10 | 2.6e-07 | 30.2 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 1 | zf-C3HC4_4 | 13 | 59 | 3.1e-06 | 26.9 | 1.5e-09 | 3.1e-06 | 26.9 |
| pfu_aug1.0_24452.1_33435.t1 | 3 | 2 | zf-B_box | 99 | 144 | 2.1e-06 | 27.5 | 2.6e-07 | 0.00055 | 19.7 |
| pfu_aug1.0_24452.1_33435.t1 | 3 | 2 | zf-RING_2 | 101 | 134 | 4.5e-09 | 35.9 | 0.079 | 170.0 | 2.1 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 2 | zf-C3HC4_2 | 102 | 133 | 2.1e-07 | 30.8 | 0.065 | 140.0 | 2.6 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 2 | zf-RING_5 | 102 | 133 | 3.9e-06 | 26.4 | 0.00032 | 0.67 | 9.7 |
| pfu_aug1.0_24452.1_33435.t1 | 2 | 2 | zf-C3HC4_4 | 119 | 132 | 3.1e-06 | 26.9 | 0.055 | 120.0 | 2.7 |
| pfu_aug1.0_24452.1_33435.t1 | 3 | 3 | zf-B_box | 161 | 193 | 2.1e-06 | 27.5 | 4.0e-08 | 8.4e-05 | 22.3 |
| pfu_aug1.0_24452.1_33435.t1 | 3 | 3 | zf-RING_2 | 174 | 194 | 4.5e-09 | 35.9 | 0.85 | 1800.0 | -1.2 |
Transcript
| Transcript ID | pfu_aug1.0_24452.1_33435.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24452.1_33435.t1 atggcggaaaagattactttggatgaccttacaaagtgtcccatctgttttgatacatatgacaaaccgagatgcctacc atgtctacatacattttgtgaaaaatgtttgcagcaattcatcaatagaaccgacaaagaggacaaaacagagacgatgt ttctttgtccaatatgccgttgcgtaatcaatgtcccctgtgaaagtaaacatgattccagtgaaattgccagccgtttt ccgaccaatcatttgattgtaactttaatggattcaaactttctacacgactctaaaaacgtttgtggaccctgtcataa gagatcgatagaagccgaagccgtatcttggtgcattgaatgcaaatctttcctttgccagcaatgccttgaataccatt ccactttgccagttctagagacacatagcacaggacctctgaaagatgcccagtggttgaaagatggaatgtcttcttcc ttatactgcaaaactcacccggagaaacgtttagagatgtattgtgaagatcatgagctcccatgttgtttgacatgtac tatgattgatcatagacggtgtgaaaaagtcgatacactggaaaatgcatcaaaaagtgtaaaggcatccaaattaaaag acgaaatggaggtcaaacttgatggggaaatgaaaagggtaagggagaaactgagctctaagaaggcagacgaaaaacac ctcttagaaaattgtaaagaaattgaattatcaattgaaaatacaacagaacgtttgactgtgcatctgaaaaagttatc gacgaaggccttgcatgaattatcagaactccaagagaagcataggaatatcattctttctgacattgaatttatggaag aacgaaaacgtactatagaaaactatcaaacattacttcaggtgagcaagggcaaactatccaacgtacagttcttccta gaggctcaacgccttaaaggattatttgacagaggaattgaatttgggagtatgaaacaatccatagaaatgaagaaaac accacggttcgaaacagaaggcaatattctagatctcctgacggttgaagcatttgggaggatatgttttgccgaaatag tcgaggaattagaagagaaaaagaaaagagaatttatagagggatccaataaacagacaaaagacacaaaaggggggaca gatgattcaaaaattcaagaaatcggtgggagttcattttgttcgaacaacaaagaggatgtagaagaagcaaacggaaa caagaaagacaagaaagatgtttgtggaaacgagccgcttgcacaaaacgaaacgtatattccttggcattgcgaactac tgaaaaaggtcaccttaaacacatcaaataacaattctgccgtgcacaactgcctgtttcttgatgatggacgtctagtg actgttgattacaaggtgcgggactcaaaagacggaattataaagatctttgatcatgacttcgaaacctttaaaacggt tcgtattcgaggcaagccatgggctgccatagcattaaactctcaagtcttagctcttactattccttctcgtgacgagt tgtgctttatggaaattgattcgttaagaaaaatataccaagattgtgacagaaaatatttcggtctagcccttaaggat aaattgacaccagtttataatcccttgggtaatcttaacgatgaaaagtgtacatttttcgtgacgtcaaagggaaatgt gtacttgagaacagttactggtgtgatcttgatgcaagtgtctttgtccaaacgatatgtgcgcaatatctactacatac aggaccgtgtgtatttcatggatgaccaagcacttgggtgttttcagctacacaggggattcctttttcaataccgagat gacgataaaagaagcatgtcaggactagcattttacaaaccaaatgatgaagtagtcatctgtggagaagataacggcga tatttctgtcataaaattagacaaggatggaaataaaaaagcagaagaagaactagattgcgatgactcgtgcagttggg attctgattctaatgatggctctgattcttcagatggagatggattatcggaaccaaccggtttggcttttagctcaaca tatgacaaactttgcattgtggacgggggtgatgtcgcgttcgtttactcaatcaaagcgggctcctattga |
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Protein
| Protein ID | pfu_aug1.0_24452.1_33435.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24452.1_33435.t1 MAEKITLDDLTKCPICFDTYDKPRCLPCLHTFCEKCLQQFINRTDKEDKTETMFLCPICRCVINVPCESKHDSSEIASRF PTNHLIVTLMDSNFLHDSKNVCGPCHKRSIEAEAVSWCIECKSFLCQQCLEYHSTLPVLETHSTGPLKDAQWLKDGMSSS LYCKTHPEKRLEMYCEDHELPCCLTCTMIDHRRCEKVDTLENASKSVKASKLKDEMEVKLDGEMKRVREKLSSKKADEKH LLENCKEIELSIENTTERLTVHLKKLSTKALHELSELQEKHRNIILSDIEFMEERKRTIENYQTLLQVSKGKLSNVQFFL EAQRLKGLFDRGIEFGSMKQSIEMKKTPRFETEGNILDLLTVEAFGRICFAEIVEELEEKKKREFIEGSNKQTKDTKGGT DDSKIQEIGGSSFCSNNKEDVEEANGNKKDKKDVCGNEPLAQNETYIPWHCELLKKVTLNTSNNNSAVHNCLFLDDGRLV TVDYKVRDSKDGIIKIFDHDFETFKTVRIRGKPWAAIALNSQVLALTIPSRDELCFMEIDSLRKIYQDCDRKYFGLALKD KLTPVYNPLGNLNDEKCTFFVTSKGNVYLRTVTGVILMQVSLSKRYVRNIYYIQDRVYFMDDQALGCFQLHRGFLFQYRD DDKRSMSGLAFYKPNDEVVICGEDNGDISVIKLDKDGNKKAEEELDCDDSCSWDSDSNDGSDSSDGDGLSEPTGLAFSST YDKLCIVDGGDVAFVYSIKAGSY |
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