Gene
| Gene Model ID | pfu_aug1.0_2447.1_66333 |
|---|---|
| Locus | scaffold2447.1 : 1 ... 3940 : + |
| To GenomeBrowser | scaffold2447.1:1..3940 |
| Genes list of scaffold | scaffold2447.1 |
| Synonym | pfu_aug2.0_972.1_08053 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2447.1_66333.t1 | 1 | 1 | Neur_chan_LBD | 4 | 63 | 2.5e-12 | 46.4 | 1.1e-15 | 4.1e-12 | 45.7 |
| pfu_aug1.0_2447.1_66333.t1 | 2 | 1 | Neur_chan_memb | 94 | 199 | 6.4e-37 | 127.7 | 1.3e-33 | 4.8e-30 | 105.1 |
| pfu_aug1.0_2447.1_66333.t1 | 2 | 2 | Neur_chan_memb | 209 | 244 | 6.4e-37 | 127.7 | 3.6e-09 | 1.3e-05 | 25.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2447.1_66333.t1 | gi|291243991|ref|XP_002741883.1| | PREDICTED: glycine receptor subunit alpha-2-like, partial [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2447.1_66333.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2447.1_66333.t1 gatcagtggaactttttcctgcaacatgaacctttacaaatatcctttggacagacaaatatgcgaaatcaaatttgaaa gttatgcattcagtgcaaatacaattgttgtaagatggcagccaactgcttctatattgaaggacggtttggaactgcca cagtttaacctcacaaaacagaaagcattcatctgtgacggaatttattatggagtaaattatacctgcgttggactaag attttacttagagagaaatagaggatattatgtcacacaggtctacgtacccagtattctagtcattattctgtcctggg taaacttctggctgaccgtcgatgccgtaccagcaagaatatcactgggactgctaactgttctgacaatgtctacacaa agtgcttctgccctaaagaatctacagaaggtgtcttacattaaagccttggacgtttggttggcaacctgccttgtgtt cgtatttgccgctctcattgagttcgccttcgtcaatgtaacagctagagtggatcagaggagaaagacatctatgaagg cagtgtcaaaatttatggaattaaagaaaaacaaggaggaggaaaatggtgacatcgatcaaaagaaaaagagaaacagc attttcaaggtggaagaaaaagcaagaaagatagacagagtgtcaagaattttgtttccagccctgttctttatattcaa tcttggatactggacattctatttgatttgggaaccagtggagggatga |
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Protein
| Protein ID | pfu_aug1.0_2447.1_66333.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2447.1_66333.t1 ISGTFSCNMNLYKYPLDRQICEIKFESYAFSANTIVVRWQPTASILKDGLELPQFNLTKQKAFICDGIYYGVNYTCVGLR FYLERNRGYYVTQVYVPSILVIILSWVNFWLTVDAVPARISLGLLTVLTMSTQSASALKNLQKVSYIKALDVWLATCLVF VFAALIEFAFVNVTARVDQRRKTSMKAVSKFMELKKNKEEENGDIDQKKKRNSIFKVEEKARKIDRVSRILFPALFFIFN LGYWTFYLIWEPVEG |
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