Gene
| Gene Model ID | pfu_aug1.0_245.1_50748 |
|---|---|
| Locus | scaffold245.1 : 36382 ... 50185 : - |
| To GenomeBrowser | scaffold245.1:36382..50185 |
| Genes list of scaffold | scaffold245.1 |
| Synonym | pfu_aug2.0_825.1_17865 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_245.1_50748.t1 | 3 | 1 | RRM_1 | 20 | 90 | 3.1e-33 | 113.2 | 1.9e-23 | 7.0e-20 | 70.4 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 1 | RRM_6 | 20 | 90 | 3.4e-22 | 78.2 | 2.6e-16 | 9.7e-13 | 47.9 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 1 | RRM_5 | 35 | 92 | 7.9e-23 | 80.0 | 1.2e-13 | 4.3e-10 | 39.2 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 2 | RRM_5 | 112 | 152 | 7.9e-23 | 80.0 | 9.9e-06 | 0.037 | 13.8 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 2 | RRM_1 | 117 | 150 | 3.1e-33 | 113.2 | 1.2e-06 | 0.0043 | 16.6 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 2 | RRM_6 | 119 | 151 | 3.4e-22 | 78.2 | 1.6e-05 | 0.058 | 13.3 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 3 | RRM_6 | 369 | 430 | 3.4e-22 | 78.2 | 2.1e-05 | 0.077 | 12.9 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 3 | RRM_1 | 370 | 430 | 3.1e-33 | 113.2 | 3.0e-08 | 0.00011 | 21.7 |
| pfu_aug1.0_245.1_50748.t1 | 3 | 3 | RRM_5 | 374 | 431 | 7.9e-23 | 80.0 | 1.2e-08 | 4.4e-05 | 23.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_245.1_50748.t1 | gi|307177474|gb|EFN66601.1| | Poly(U)-binding-splicing factor half pint [Camponotus floridanus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 2 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_245.1_50748.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_245.1_50748.t1 atgcagaatttccaaaatacagttcaaaggcagcaagctttagccttgatgtgcaggatatatgtgggcagtattaactt tgaaatcaaagaagacacaataaagcaagcctttcttccatttggacctatcaagagtgtgaacttatcatgggacccag tgactaacaaacataaaggatttgcctttatagagtatgatataccagaggcggctcagctagctctggaacaaatgaat ggggtcatgattggaggaagaaatattaaggttcgactgtacatcacacactcttgtgtgaactcgagagatgactattt gcaatgttactacatgataatacatactacatattacagggggtatggcttcatggagtacgaaactgcacaaggagcat tagatgctgtacagtctatgaacttgtttgacttgggaggacaatatcttagagttggaaaggctataactcctccagat gcacttcagccatcagccggtcccagtaccctacctacagccgctgctgtggcggccgctgctgttactgctaaaataac cgcaatggatgctcaggaacagatcaaagctttggcaccacctggtatagctgtacctaccagccttggagagaagtctt taccttcatcagtagccacacccccaggaggaaactcgcctaagtttatcccacctgctgcccctccccctgtacctgta ggggtggtagtcccacagctaggaggggcaggagttgttgccccagtgtctttaggaggtattcccatgccaatgcctgc tgtacaaccccctccacctttacctgtatcaaatcaagtcaacagtctaccaggatccatgccaacagaaatccccttac ccccaccaccaccccaggagaaggagaaagagaaggaaaaagaagataagaagaaagcatcggaggaagatccagcacag accctggaccaacaagagaacatgaagatcagtggtagtaatgcaagacatatggtcatgcagaaacttatgaggaagtc agagtgccgagtcatggttttacgtaatatggtgggtccagaagatttagatgatgaacttgaaaatgaagtaacagatg aatgtggaaagtttggaaatgtaaaacgtgtcattatataccaagaaagacagagtgaagaagttgatgcggaaatcatt gtcaaaatatttgttgaattcacacaacaatcagaactagaaaaagctgtttctgcattacatggtagatattttggagg tcgggttgttacggcagagaagtatgatgaagacatgtttaatgctaacgatttatcaggttga |
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Protein
| Protein ID | pfu_aug1.0_245.1_50748.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_245.1_50748.t1 MQNFQNTVQRQQALALMCRIYVGSINFEIKEDTIKQAFLPFGPIKSVNLSWDPVTNKHKGFAFIEYDIPEAAQLALEQMN GVMIGGRNIKVRLYITHSCVNSRDDYLQCYYMIIHTTYYRGYGFMEYETAQGALDAVQSMNLFDLGGQYLRVGKAITPPD ALQPSAGPSTLPTAAAVAAAAVTAKITAMDAQEQIKALAPPGIAVPTSLGEKSLPSSVATPPGGNSPKFIPPAAPPPVPV GVVVPQLGGAGVVAPVSLGGIPMPMPAVQPPPPLPVSNQVNSLPGSMPTEIPLPPPPPQEKEKEKEKEDKKKASEEDPAQ TLDQQENMKISGSNARHMVMQKLMRKSECRVMVLRNMVGPEDLDDELENEVTDECGKFGNVKRVIIYQERQSEEVDAEII VKIFVEFTQQSELEKAVSALHGRYFGGRVVTAEKYDEDMFNANDLSG |
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