Gene
| Gene Model ID | pfu_aug1.0_2469.1_15830 |
|---|---|
| Locus | scaffold2469.1 : 35114 ... 45603 : - |
| To GenomeBrowser | scaffold2469.1:35114..45603 |
| Genes list of scaffold | scaffold2469.1 |
| Synonym | pfu_aug2.0_96.1_20226 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2469.1_15830.t1 | 6 | 1 | Filamin | 7 | 48 | 0.0 | 309.2 | 6.5e-13 | 8.8e-10 | 39.0 |
| pfu_aug1.0_2469.1_15830.t1 | 5 | 1 | Y_Y_Y | 12 | 43 | 4.8e-08 | 32.6 | 0.11 | 150.0 | 2.2 |
| pfu_aug1.0_2469.1_15830.t1 | 6 | 2 | Filamin | 55 | 140 | 0.0 | 309.2 | 6.6e-24 | 8.9e-21 | 74.3 |
| pfu_aug1.0_2469.1_15830.t1 | 5 | 2 | Y_Y_Y | 105 | 137 | 4.8e-08 | 32.6 | 0.00026 | 0.35 | 10.6 |
| pfu_aug1.0_2469.1_15830.t1 | 6 | 3 | Filamin | 204 | 287 | 0.0 | 309.2 | 5.6e-21 | 7.6e-18 | 64.9 |
| pfu_aug1.0_2469.1_15830.t1 | 5 | 3 | Y_Y_Y | 260 | 281 | 4.8e-08 | 32.6 | 0.049 | 66.0 | 3.3 |
| pfu_aug1.0_2469.1_15830.t1 | 6 | 4 | Filamin | 298 | 383 | 0.0 | 309.2 | 2.6e-12 | 3.5e-09 | 37.1 |
| pfu_aug1.0_2469.1_15830.t1 | 6 | 5 | Filamin | 391 | 476 | 0.0 | 309.2 | 1.0e-15 | 1.4e-12 | 48.0 |
| pfu_aug1.0_2469.1_15830.t1 | 5 | 4 | Y_Y_Y | 447 | 466 | 4.8e-08 | 32.6 | 0.00032 | 0.43 | 10.3 |
| pfu_aug1.0_2469.1_15830.t1 | 6 | 6 | Filamin | 516 | 603 | 0.0 | 309.2 | 4.2e-15 | 5.7e-12 | 46.0 |
| pfu_aug1.0_2469.1_15830.t1 | 5 | 5 | Y_Y_Y | 570 | 592 | 4.8e-08 | 32.6 | 0.2 | 270.0 | 1.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2469.1_15830.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2469.1_15830.t1 atgccgtcgggtaagaaggcctatcccaagatccaggacaataaagacggtaccgtcaccatcaggtaccaacccacgga aacaggactccatgaactttacgtcaaatataataatgatgatattgaaggaagtcccttcaagttccacgtggacgcgg ttaacagtggtcatgtgactgcatatggtccaggtttgtgccatggtatcgttaacgagccggcagagtttaccatcgtc accaaagatgctggtgcaggtggtttatctctggccatcgagggtccgtctaagacagagattaagtgtgtagacaacgg tgatggtacctgcacagtgagctacctgcctaccgctccaggagagtataatatcaccgtcaaatttgctgatcaacata tctctggctcaccattcactgctaaaatcacacgaagtccattcaatgtcaaggttggaggtgagccatcgtcacgcgta acagagagaatcacacgtcatagagaggcagctgacatcacacacattggaagtcaatgtgaacttagccttaaaatccc aggaagtccatttgagttcacagttggtcccatcgctggtggaggctcccacaaagttcacgctgccggcccaggattag agaaaggagaagtcaaccaaccatgtgactttaacatttacactcgtgaggccggtgcaggaggtttatctatagccgtt gagggtccatcaaaggccgagcttgactttgacgacaggaaggacggatcctgtggtgtatcctacgtcgttagtgagcc aggagagtatatggtgtctgtcaaattcaacgacgaacatatcccagaatcccccttcaaggtctatgtgtcacccagca ttggagacgccaggaaactttccgtttcagctttacaatccaagggattacaggttggtaagccagcagcctttgttgtt aactataatggagcagctaagggtaaactgaaggctagagttgtctcccctagcggtactgaggaagaggctctcataca ggaaatagatgaaggagagtatgctgtgcgatttatcccacgtgagaatggagtacacaatgtgtttgtcacctttgatg gttgtgagataccagagagccccttccgtattctggtaggaaaagttgatgccgatccaggcatggtcaccgctacagga gatggtcttaaacagggtcgtacaggtgagacatgtaagttcatggtgaacacatgtaacgctggagctggtgccctcgc cgttaccgtggaggggccatcaaaggtcaaactagaatgtaaggaggtcgaggaaggttacgagttcacatacagcccca cagcaccaggggactaccttatcaccatcagatatgctggtgtcaacatcgcaggaagtccattcaaggccaagattgaa ggtcaaggtaaaccatctggttaccatgagcaagcttcagttgttgtggaaacagtaacaaagaccagcattatgagcaa atttagcggtcttcagaaattccactctgatgccagtaagtgtacatcggagggaatgggtctgaagaaagccttccgtg gaaagcaagctacatttaccgtagacacttcacatgctggtaacaacatgatgtttgtgggaatgatgggtccaaaggga ccatgtgaagaactctgtgttaaaaacactggtggttacgtgtacaaaatgaattacatcgtaaaggaacgtggagatta catgctcattgtcaagtggggagatgaacacatacccggcagtcctttctgtgtacatgtcgagtaa |
|
Protein
| Protein ID | pfu_aug1.0_2469.1_15830.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2469.1_15830.t1 MPSGKKAYPKIQDNKDGTVTIRYQPTETGLHELYVKYNNDDIEGSPFKFHVDAVNSGHVTAYGPGLCHGIVNEPAEFTIV TKDAGAGGLSLAIEGPSKTEIKCVDNGDGTCTVSYLPTAPGEYNITVKFADQHISGSPFTAKITRSPFNVKVGGEPSSRV TERITRHREAADITHIGSQCELSLKIPGSPFEFTVGPIAGGGSHKVHAAGPGLEKGEVNQPCDFNIYTREAGAGGLSIAV EGPSKAELDFDDRKDGSCGVSYVVSEPGEYMVSVKFNDEHIPESPFKVYVSPSIGDARKLSVSALQSKGLQVGKPAAFVV NYNGAAKGKLKARVVSPSGTEEEALIQEIDEGEYAVRFIPRENGVHNVFVTFDGCEIPESPFRILVGKVDADPGMVTATG DGLKQGRTGETCKFMVNTCNAGAGALAVTVEGPSKVKLECKEVEEGYEFTYSPTAPGDYLITIRYAGVNIAGSPFKAKIE GQGKPSGYHEQASVVVETVTKTSIMSKFSGLQKFHSDASKCTSEGMGLKKAFRGKQATFTVDTSHAGNNMMFVGMMGPKG PCEELCVKNTGGYVYKMNYIVKERGDYMLIVKWGDEHIPGSPFCVHVE |
|