Gene
| Gene Model ID | pfu_aug1.0_24705.1_26197 |
|---|---|
| Locus | scaffold24705.1 : 1 ... 8624 : + |
| To GenomeBrowser | scaffold24705.1:1..8624 |
| Genes list of scaffold | scaffold24705.1 |
| Synonym | pfu_aug2.0_380.1_00680 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24705.1_26197.t1 | 4 | 1 | WD40 | 29 | 55 | 6.7e-08 | 32.1 | 1.1e-06 | 0.016 | 15.0 |
| pfu_aug1.0_24705.1_26197.t1 | 4 | 2 | WD40 | 81 | 101 | 6.7e-08 | 32.1 | 0.48 | 7100.0 | -2.9 |
| pfu_aug1.0_24705.1_26197.t1 | 4 | 3 | WD40 | 133 | 149 | 6.7e-08 | 32.1 | 0.17 | 2600.0 | -1.5 |
| pfu_aug1.0_24705.1_26197.t1 | 4 | 4 | WD40 | 221 | 254 | 6.7e-08 | 32.1 | 5.0e-06 | 0.074 | 12.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24705.1_26197.t1 | gi|260834570|ref|XP_002612283.1| | hypothetical protein BRAFLDRAFT_246700 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_24705.1_26197.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24705.1_26197.t1 ccgtgggctttgttaacggatcagtgagagtattggacgctataacgttacaagacgagcaggaggaaccgttccgttac gctcgttatgccgtgactcatatcgccttctcccatgattcacagtatatagccactgccgatggtgaatacacagtgtc agtgtttaaacgacagcgaggtttggatgtacaaccttacatatatctaggaaggtatagggcacactataaggaaatca aagacatcatatttggggtacatctcgattcaaatcaacccagacttatgtccctcggaatggacagagtgcttgttgaa tatgaccttgaaaatagtgcaaaagacgatttaagaatttcaagttccgatagaatagaacaaagtgctatcccacaatg catgacttggtatccaccaatcacaaaggagaatttcatattaactgctaacgatcaattcaaatttaaattatacaact caacgacaaaaatgtgcaggaaaactctattaggaccaacgtacggaacacccatacaaaagatagctgtagtaccgacc aaggatatcgttaaggacaaacggtacctggcctacattaccaaggataaaattggcatgcatgtactaccactcgacgg taatccgcacaacgccatggccctgattggtcaccctgttggggtatcagagatggtgtgtagttttgacggtaaatatc tcttcacagctggtggtacggacgcctcggttcacatgtgggaaattaacgtagctgttatggagatagaggacatgttg aatgaggtgaagttcagtcgatatgtagaaactgggcagtacgtagaagatatagatcttggagaatttataagatgtga gcatatgacagagtatgaattggccgagtacctaaccacgttactaggatacaatgctgagggaggaagtagtgaactgc aggagtttgactccacgactgccggcgatataatcgagcaaaatcttcccgtaaacatcacagaagaaatgtttgctaat gaaattctcggattttccatgtacagagatgcattgaatgctgggatggaagcccatggctaa |
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Protein
| Protein ID | pfu_aug1.0_24705.1_26197.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24705.1_26197.t1 VGFVNGSVRVLDAITLQDEQEEPFRYARYAVTHIAFSHDSQYIATADGEYTVSVFKRQRGLDVQPYIYLGRYRAHYKEIK DIIFGVHLDSNQPRLMSLGMDRVLVEYDLENSAKDDLRISSSDRIEQSAIPQCMTWYPPITKENFILTANDQFKFKLYNS TTKMCRKTLLGPTYGTPIQKIAVVPTKDIVKDKRYLAYITKDKIGMHVLPLDGNPHNAMALIGHPVGVSEMVCSFDGKYL FTAGGTDASVHMWEINVAVMEIEDMLNEVKFSRYVETGQYVEDIDLGEFIRCEHMTEYELAEYLTTLLGYNAEGGSSELQ EFDSTTAGDIIEQNLPVNITEEMFANEILGFSMYRDALNAGMEAHG |
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