Gene
| Gene Model ID | pfu_aug1.0_24752.1_47684 |
|---|---|
| Locus | scaffold24752.1 : 7860 ... 20265 : - |
| To GenomeBrowser | scaffold24752.1:7860..20265 |
| Genes list of scaffold | scaffold24752.1 |
| Synonym | pfu_aug2.0_3045.1_19011 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24752.1_47684.t1 | 2 | 1 | EF-hand_8 | 81 | 106 | 3.0e-10 | 39.5 | 0.0078 | 12.0 | 5.6 |
| pfu_aug1.0_24752.1_47684.t1 | 1 | 1 | EF-hand_7 | 81 | 142 | 1.1e-06 | 28.6 | 2.7e-09 | 4.1e-06 | 26.8 |
| pfu_aug1.0_24752.1_47684.t1 | 2 | 2 | EF-hand_8 | 100 | 142 | 3.0e-10 | 39.5 | 1.1e-12 | 1.6e-09 | 37.2 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 1 | Nucleoporin_N | 203 | 273 | 2.8e-07 | 29.6 | 0.098 | 150.0 | 0.9 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 1 | WD40 | 235 | 263 | 2.5e-33 | 112.7 | 0.0027 | 4.0 | 7.4 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 2 | WD40 | 356 | 377 | 2.5e-33 | 112.7 | 0.0017 | 2.5 | 8.1 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 3 | WD40 | 408 | 429 | 2.5e-33 | 112.7 | 1.1e-05 | 0.016 | 15.0 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 4 | WD40 | 435 | 472 | 2.5e-33 | 112.7 | 2.7e-06 | 0.004 | 17.0 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 2 | Nucleoporin_N | 452 | 567 | 2.8e-07 | 29.6 | 0.0016 | 2.4 | 6.8 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 5 | WD40 | 493 | 507 | 2.5e-33 | 112.7 | 0.27 | 400.0 | 1.1 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 6 | WD40 | 528 | 560 | 2.5e-33 | 112.7 | 0.0024 | 3.5 | 7.6 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 3 | Nucleoporin_N | 586 | 617 | 2.8e-07 | 29.6 | 0.84 | 1200.0 | -2.2 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 7 | WD40 | 587 | 612 | 2.5e-33 | 112.7 | 5.2e-07 | 0.00076 | 19.2 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 8 | WD40 | 668 | 696 | 2.5e-33 | 112.7 | 0.00015 | 0.23 | 11.4 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 4 | Nucleoporin_N | 817 | 873 | 2.8e-07 | 29.6 | 0.021 | 31.0 | 3.1 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 5 | Nucleoporin_N | 825 | 951 | 2.8e-07 | 29.6 | 0.00022 | 0.33 | 9.6 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 9 | WD40 | 842 | 855 | 2.5e-33 | 112.7 | 0.39 | 580.0 | 0.6 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 10 | WD40 | 876 | 901 | 2.5e-33 | 112.7 | 0.1 | 150.0 | 2.4 |
| pfu_aug1.0_24752.1_47684.t1 | 11 | 11 | WD40 | 974 | 1008 | 2.5e-33 | 112.7 | 2.5e-08 | 3.7e-05 | 23.4 |
| pfu_aug1.0_24752.1_47684.t1 | 6 | 6 | Nucleoporin_N | 990 | 1012 | 2.8e-07 | 29.6 | 0.0015 | 2.3 | 6.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24752.1_47684.t1 | gi|291228464|ref|XP_002734200.1| | PREDICTED: WD repeat-containing protein on Y chromosome-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_24752.1_47684.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24752.1_47684.t1 atggctctacgggaatcgaaatctacctttgaaacgcatgcagaacaaagtgaatccgggacgcaagtaagatcacgatc aacatataatactgtgccagtttcacaaacaaaaccagaggtgttggagtcttcgagaggtctggatagcggttatagca attacagctcaggacctcattcaaggatagaaaagaaagatttcaaccccgaggtagaagcaacaaatgagcgatatgcg caacttcaagcaattttcgaagcagcagatgaagatggacgaccaggcttaagtatagatgaattcaaaacagcattgag gaaaactgtagggtataatatgacggataatgaacttgaattgcttttcatgaaagtcgatgcaaactgtgatggtaccg ttgattgggaggagtatgttacttacaatttactcgagtacaaagaacgcacacagatgatagaaatgttgcgtgatcgg cccttcccacaggaaaccaaagaaatcccaagccgacacagagatacaatagtaagagttgcggtctatcctacagttca taaaaaggcatcaaaatgtgtccttgattacagcacgggtcgatttgtgacattaagcaaagaaggtatcatttcatttt ggacaccaaagatgaagttggtcaaaaccgatgtgacgcacccccacatggacaggtcaacgcatccctggatcacagat cttgcgtgtctgtacaatgtgaatcagttggcggtttcatcaacagatcgagatatcatagtattcgacatacaagcaaa taaattcacaaagagataccatttaacgggtatagacagctgcatcacagtcatgaatttctgggcaaacatggacgatc tgaatcatgccgtcctcttgtttggagacacatctgggtgtgtgtatgttatcatctttgaaaccgctctcaaaggaggt ctttttggtgcaatcgcagggaaacaaagtgcttttaagaaagtcaacatggctgaagttctaagaggatttctgttggg tgtcaagggttataggatggggaagttacacgagaactgggtgactcagatcttatatatgccatctctgaatatgtttg cctcctgtagtcagacctcagatacctcaatgtacgtaggtgatctcatgaaaaagaagatgagttcatacttcaaagtg aataaaggtctcctgacatttgattactgtccggataataatgtattagtcactggtggaatggactatctcatacgaat ttggaatccctacgtcaacagcaaacccgtcgtggttcttaaaggacatacgaagcccatcaatcacgtgatcatcaatt ccccgcgaaaccaaattatcagcgtcgacaagggaaaaaacatcaaagtgttcagtatgaaagatcagacctgcgtgcaa caactgagtggaaggatcgtgaagctaggaccaacggctatatcctctgtttgcttcaatccggccacccagaagttggt tcttgcgacaagccaaatagaaattcttgagagaagcgaggaggatgaaaagtgcattgaagtttactctcatcgtcgac cagtcacggcagccctgtacaaccctgtcttcaagaccgtagtcagtgcttgtaggggatctgttatcagtgtctgggaa cttaagacaggagaaaaagtcatacagttcgtgaatgctcacaaaattgtggagagaggagtcgaatatcccgtagaaat tacgacaatgacttttgatggtccttgccgccgattgattacaggtgctcgagacggaagtgtgaaagtttggaacttca acaatggtgcttgcctacagcagtttgacgttcccggaggtttgaccattacctccatagttagcacacatcatcgaata tatatcactggatggtgtcagctggtgcacatctacgtagatggaggaggggaggaatacaggaagaactggaggaatag acatacagacgacatactctgtatgtctcacatgaacccaaacataatggctacggggtcatacaacggggacgtcataa tctggtcacgtgacacaggacagatgtactgcaagttgaatgccttttccgggacaaaaccctttacagacaccgcccat gcattaaacgcggaacagaagctagacgaagaagatgaatccgttgaagatgaccgagaccagtcactgtccccgtcttg gaaaggctcaaaagcgaccaaagctgtaagaactggtattggacttcttcagaaaattcgccatgttgctcgtggtgtcc aaggatttccgaaagaggatgacgaatcaaggactctcgaatcacccctcaaccatccactcctctcgtctataggggat aagtcagaacctcttcaatcgaaacgtgaggagtatgacgacatctgtaagagttatgaagcagctgtagagcaaatcgt cttccttaacacgagagatcaacttcacagagatactgcttctcttgttacttgtggctctgagggatgggtcagattct ggtccttacaccatcaaggcggtctcctgggtcaattcaatgcggcacattctgtgggggaaagtgtgcatgctatggtt acagacgacaacaaccagtttcttatcacagcagataccgcggggtacgttaaggtttgggaaatcagtgaatactgcac aaaagatacctatacattggaccagagagagaagcgttggaatgagcttcttcatctcttctctttcatgagatttgaat ggagggggaaagatgtaccaaagcagttttcattcttgagcatgcgtccatgcaatattggaacacgacctccgccgatg gtgacagagcctcagaagacactgagatggccacttctggtaaattctttcagagctcacatacggatgatcaataccat agattatgtcaatgaccgtaaagtgatcatcacagccagtgaagatagttcaatacgtgtttgggcattacatggtgggt acattggtacgtttggagaaacatggcctgtaatcgataagattttgacgaaaggaggttctgatgttgagactaggata ccaaatgacctgaggagggttggatcagctaggactctacgtgtccttagtgcaggacaaccaactcagaaatggaagtc agcagtcagtgtgataaaggcacgtcagatgttggagatgctgagtcaatttgagcaggctggagatgatgaccaaccca gaaaagacgagagaaccgagaagaagcttgaagcaagtaatatcctcggtaaatcttacaagaggaaagttagacataaa attccggcagatatccccaaagtcatcgaaacaccaacttcgattgctgtataccatgcgttgaagtttgtggagcttac cgatctggacaaactgtttgaccaaaaactgttggaagacatgaaattacgacggtacggaggaaatctggtcagtaagg tgaaaggaccccaaaagaaaaagtcaaacgaacctgctatcatagaaatcttcaacaaggtcacaaagaaaccaaccatt ccagttcctaagtttaggaaacaaccaacaaagatgaagaagatccacgcttctctccgtgaaaagatggataacaatct tccacctttttctgaacgaatgaaaaggaatcacaaacgtaatactgagactgctgtcattcaggtcttatattcctgtg taatgtttgaattattccctccaaaaatcacgagaagtacattgtattgtaaagcagcatcattatga |
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Protein
| Protein ID | pfu_aug1.0_24752.1_47684.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24752.1_47684.t1 MALRESKSTFETHAEQSESGTQVRSRSTYNTVPVSQTKPEVLESSRGLDSGYSNYSSGPHSRIEKKDFNPEVEATNERYA QLQAIFEAADEDGRPGLSIDEFKTALRKTVGYNMTDNELELLFMKVDANCDGTVDWEEYVTYNLLEYKERTQMIEMLRDR PFPQETKEIPSRHRDTIVRVAVYPTVHKKASKCVLDYSTGRFVTLSKEGIISFWTPKMKLVKTDVTHPHMDRSTHPWITD LACLYNVNQLAVSSTDRDIIVFDIQANKFTKRYHLTGIDSCITVMNFWANMDDLNHAVLLFGDTSGCVYVIIFETALKGG LFGAIAGKQSAFKKVNMAEVLRGFLLGVKGYRMGKLHENWVTQILYMPSLNMFASCSQTSDTSMYVGDLMKKKMSSYFKV NKGLLTFDYCPDNNVLVTGGMDYLIRIWNPYVNSKPVVVLKGHTKPINHVIINSPRNQIISVDKGKNIKVFSMKDQTCVQ QLSGRIVKLGPTAISSVCFNPATQKLVLATSQIEILERSEEDEKCIEVYSHRRPVTAALYNPVFKTVVSACRGSVISVWE LKTGEKVIQFVNAHKIVERGVEYPVEITTMTFDGPCRRLITGARDGSVKVWNFNNGACLQQFDVPGGLTITSIVSTHHRI YITGWCQLVHIYVDGGGEEYRKNWRNRHTDDILCMSHMNPNIMATGSYNGDVIIWSRDTGQMYCKLNAFSGTKPFTDTAH ALNAEQKLDEEDESVEDDRDQSLSPSWKGSKATKAVRTGIGLLQKIRHVARGVQGFPKEDDESRTLESPLNHPLLSSIGD KSEPLQSKREEYDDICKSYEAAVEQIVFLNTRDQLHRDTASLVTCGSEGWVRFWSLHHQGGLLGQFNAAHSVGESVHAMV TDDNNQFLITADTAGYVKVWEISEYCTKDTYTLDQREKRWNELLHLFSFMRFEWRGKDVPKQFSFLSMRPCNIGTRPPPM VTEPQKTLRWPLLVNSFRAHIRMINTIDYVNDRKVIITASEDSSIRVWALHGGYIGTFGETWPVIDKILTKGGSDVETRI PNDLRRVGSARTLRVLSAGQPTQKWKSAVSVIKARQMLEMLSQFEQAGDDDQPRKDERTEKKLEASNILGKSYKRKVRHK IPADIPKVIETPTSIAVYHALKFVELTDLDKLFDQKLLEDMKLRRYGGNLVSKVKGPQKKKSNEPAIIEIFNKVTKKPTI PVPKFRKQPTKMKKIHASLREKMDNNLPPFSERMKRNHKRNTETAVIQVLYSCVMFELFPPKITRSTLYCKAASL |
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