Gene
| Gene Model ID | pfu_aug1.0_248.1_14935 |
|---|---|
| Locus | scaffold248.1 : 89516 ... 94875 : + |
| To GenomeBrowser | scaffold248.1:89516..94875 |
| Genes list of scaffold | scaffold248.1 |
| Synonym | pfu_aug2.0_164.1_13708 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-twist1 |
| Description | Best hit to NP_476527 twist-related protein 2 [Homo sapiens] with 5e-56 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_248.1_14935.t1 | 2 | 1 | HLH | 41 | 50 | 3.0e-19 | 68.4 | 0.52 | 2600.0 | -1.8 |
| pfu_aug1.0_248.1_14935.t1 | 2 | 2 | HLH | 84 | 134 | 3.0e-19 | 68.4 | 1.3e-22 | 6.2e-19 | 67.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_248.1_14935.t1 | gi|327279552|ref|XP_003224520.1| | 8.96831e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_248.1_14935.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_248.1_14935.t1 atgattccaaagacaaatatgtcggttgatttcggacattttcacggtggtcaagcggtcaagcaagagacaaattcgga cagttttacgtatttagagagtgaacttgacatcaagcgcaaaaatagaaaacggagcctttcaaagagtagtgacagtt tacaaagtgcgtcatctccggaaagttttgatgatgtccacacaaaaagacagaagaaaaagcagctttcattcgatgac attcagacacaacgcgtcatggcaaatgttagagagcgtcaacgcacacagtcactcaatgacgcattcgcgcagttgcg tcaaatcattcctacacttccgtcagacaaactgagtaaaatccagacgctgaagttagcgacgagatatattgatttct tatacagcgtgttgagaagtgacaatacgtttgaaatatacgccaataataaaatgtctagttgtaactatgtggccaat gagagactgagttatgcattttctgtctggagaatggagggatcatgggccatgtcatctgattga |
|
Protein
| Protein ID | pfu_aug1.0_248.1_14935.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_248.1_14935.t1 MIPKTNMSVDFGHFHGGQAVKQETNSDSFTYLESELDIKRKNRKRSLSKSSDSLQSASSPESFDDVHTKRQKKKQLSFDD IQTQRVMANVRERQRTQSLNDAFAQLRQIIPTLPSDKLSKIQTLKLATRYIDFLYSVLRSDNTFEIYANNKMSSCNYVAN ERLSYAFSVWRMEGSWAMSSD |
|