Gene
| Gene Model ID | pfu_aug1.0_24894.1_33474 |
|---|---|
| Locus | scaffold24894.1 : 3836 ... 8424 : + |
| To GenomeBrowser | scaffold24894.1:3836..8424 |
| Genes list of scaffold | scaffold24894.1 |
| Synonym | pfu_aug2.0_40.1_00114 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24894.1_33474.t1 | 1 | 1 | Fibrinogen_C | 1 | 175 | 0.0 | 178.0 | 0.0 | 0.0 | 177.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24894.1_33474.t1 | gi|297662671|ref|XP_002809823.1| | PREDICTED: LOW QUALITY PROTEIN: tenascin-R [Pongo abelii] | 1.96182e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_24894.1_33474.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24894.1_33474.t1 atggtgaccgaaggcggcggctggacggtctttcaaaggagaactgacggaagtgttgatttctacagaggatggagtga ttacaagattggatttggagacacatcaaaggaatattggcttggaaatgaagcaatacatacactaacagaagacggaa cctgtaccctgagaattgatatggtaactgtacagaatgagaaaggttttgccaaatttacaaattttacaatttcatct gaggacaaaaaatacaaaatggactacaacaaatactatggaacagctggtgaaacttctttctcgtaccacaagggtat gaagttctctacaaaagacgtggataatgatgaaaagggtagcaactgcgctcaggagtatacgggagcgtggtggtaca agaattgtcattactcaaacctcaatggaaaatacggcggatctggttctaagtacatgcgctggtgggattggaagaat actaaaaaagatgccttcatgaaggaaaccattatgatgataaaatgttag |
|
Protein
| Protein ID | pfu_aug1.0_24894.1_33474.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24894.1_33474.t1 MVTEGGGWTVFQRRTDGSVDFYRGWSDYKIGFGDTSKEYWLGNEAIHTLTEDGTCTLRIDMVTVQNEKGFAKFTNFTISS EDKKYKMDYNKYYGTAGETSFSYHKGMKFSTKDVDNDEKGSNCAQEYTGAWWYKNCHYSNLNGKYGGSGSKYMRWWDWKN TKKDAFMKETIMMIKC |
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