Gene
| Gene Model ID | pfu_aug1.0_24950.1_69672 |
|---|---|
| Locus | scaffold24950.1 : 1 ... 8399 : + |
| To GenomeBrowser | scaffold24950.1:1..8399 |
| Genes list of scaffold | scaffold24950.1 |
| Synonym | pfu_aug2.0_646.1_21015 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_24950.1_69672.t1 | 1 | 1 | RNA_pol_Rpb1_5 | 2 | 254 | 5.6e-33 | 114.3 | 5.4e-37 | 7.9e-33 | 113.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_24950.1_69672.t1 | gi|348576170|ref|XP_003473860.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_24950.1_69672.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24950.1_69672.t1 acattacacagggtgtgcccaggatcaaagaaatcatcaatgcctccaaggttattagtacacctataattacggcacag ttaatgaacagttctgacgcagagtatgcaagagttgtcaagggacgtattgagaaaacaactcttggtgaggtgtcgga gtatattgaggaagttttcctaccagacgactgctttatactcgtcaaactggatcaggacagaatcaaacttctaaagc ttgaagtgaatgttgacagcatcaaggaatctatctgcaaaagtaaattacgagtcaaacctcaagatatacaagttcac agtgaggcagtgttgactgtacatcccagagagacgtctaaaagttccttgtattatgttttacaaactctgaagaaaga gcttggtggtgtcatgattaagggtgttcagaatgtcagcagggctgttatacacgtagatgagaagaaaggaaatagtt acaagcttctggtagagggagacaacttgctggcggtaatggcaacaccaggtataaagggaacccatgctttctcaaac aatacatttgcaatggagaagactctcggcatcgaagcagcacgtacgaccatcataaacgaagtagtgtatactatgtc tagtcatggaatgagcatcgatattcgtcatgtgatgttactggctgacctcatgacctttaagggtgaagttcttggaa ttacaagatttggtttggcaaagatgaaagagagtgttctcatgttagcttca |
|
Protein
| Protein ID | pfu_aug1.0_24950.1_69672.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_24950.1_69672.t1 ITQGVPRIKEIINASKVISTPIITAQLMNSSDAEYARVVKGRIEKTTLGEVSEYIEEVFLPDDCFILVKLDQDRIKLLKL EVNVDSIKESICKSKLRVKPQDIQVHSEAVLTVHPRETSKSSLYYVLQTLKKELGGVMIKGVQNVSRAVIHVDEKKGNSY KLLVEGDNLLAVMATPGIKGTHAFSNNTFAMEKTLGIEAARTTIINEVVYTMSSHGMSIDIRHVMLLADLMTFKGEVLGI TRFGLAKMKESVLMLAS |
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