Gene
| Gene Model ID | pfu_aug1.0_25020.1_33481 |
|---|---|
| Locus | scaffold25020.1 : 1 ... 8364 : - |
| To GenomeBrowser | scaffold25020.1:1..8364 |
| Genes list of scaffold | scaffold25020.1 |
| Synonym | pfu_aug2.0_9892.1_09743 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | CaLP-related protein |
| Description | Blast best hit to DDBJ AY663847 (Pinctada fucata) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_25020.1_33481.t1 | 3 | 1 | EF-hand_4 | 8 | 24 | 1.3e-07 | 31.3 | 0.13 | 120.0 | 2.4 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 1 | EF-hand_7 | 10 | 24 | 1.2e-23 | 82.9 | 0.013 | 13.0 | 5.9 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 1 | EF-hand_6 | 10 | 26 | 7.8e-16 | 56.4 | 0.0027 | 2.6 | 8.1 |
| pfu_aug1.0_25020.1_33481.t1 | 5 | 1 | EF-hand_1 | 11 | 26 | 3.5e-24 | 82.2 | 3.0e-05 | 0.03 | 13.6 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 1 | EF-hand_5 | 11 | 24 | 1.3e-14 | 52.7 | 0.27 | 270.0 | 1.1 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 1 | EF-hand_8 | 12 | 50 | 1.6e-25 | 88.4 | 8.7e-07 | 0.00086 | 18.8 |
| pfu_aug1.0_25020.1_33481.t1 | 2 | 1 | EFhand_Ca_insen | 30 | 62 | 3.3e-06 | 26.9 | 3.4e-09 | 3.3e-06 | 26.9 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 2 | EF-hand_4 | 34 | 98 | 1.3e-07 | 31.3 | 0.00014 | 0.14 | 11.9 |
| pfu_aug1.0_25020.1_33481.t1 | 5 | 2 | EF-hand_1 | 36 | 62 | 3.5e-24 | 82.2 | 1.4e-10 | 1.4e-07 | 30.2 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 2 | EF-hand_6 | 36 | 62 | 7.8e-16 | 56.4 | 5.0e-10 | 5.0e-07 | 29.0 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 2 | EF-hand_7 | 37 | 91 | 1.2e-23 | 82.9 | 6.5e-15 | 6.4e-12 | 45.4 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 2 | EF-hand_5 | 37 | 60 | 1.3e-14 | 52.7 | 7.2e-08 | 7.2e-05 | 21.9 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 2 | EF-hand_8 | 49 | 91 | 1.6e-25 | 88.4 | 5.8e-13 | 5.7e-10 | 38.6 |
| pfu_aug1.0_25020.1_33481.t1 | 5 | 3 | EF-hand_1 | 73 | 91 | 3.5e-24 | 82.2 | 1.2e-05 | 0.012 | 14.8 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 3 | EF-hand_5 | 79 | 90 | 1.3e-14 | 52.7 | 0.00087 | 0.86 | 9.0 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 3 | EF-hand_6 | 80 | 90 | 7.8e-16 | 56.4 | 0.059 | 58.0 | 3.9 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 3 | EF-hand_4 | 94 | 156 | 1.3e-07 | 31.3 | 6.8e-07 | 0.00067 | 19.3 |
| pfu_aug1.0_25020.1_33481.t1 | 2 | 2 | EFhand_Ca_insen | 109 | 127 | 3.3e-06 | 26.9 | 0.78 | 770.0 | 0.1 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 3 | EF-hand_8 | 115 | 156 | 1.6e-25 | 88.4 | 9.6e-14 | 9.4e-11 | 41.1 |
| pfu_aug1.0_25020.1_33481.t1 | 5 | 4 | EF-hand_1 | 115 | 124 | 3.5e-24 | 82.2 | 0.92 | 910.0 | -0.5 |
| pfu_aug1.0_25020.1_33481.t1 | 3 | 3 | EF-hand_7 | 115 | 157 | 1.2e-23 | 82.9 | 2.1e-11 | 2.0e-08 | 34.2 |
| pfu_aug1.0_25020.1_33481.t1 | 5 | 5 | EF-hand_1 | 132 | 158 | 3.5e-24 | 82.2 | 5.9e-10 | 5.8e-07 | 28.3 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 4 | EF-hand_5 | 139 | 156 | 1.3e-14 | 52.7 | 2.5e-06 | 0.0025 | 17.0 |
| pfu_aug1.0_25020.1_33481.t1 | 4 | 4 | EF-hand_6 | 140 | 159 | 7.8e-16 | 56.4 | 1.8e-05 | 0.017 | 14.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_25020.1_33481.t1 | gi|324535412|gb|ADY49415.1| | 6.0e-33 |
Transcript
| Transcript ID | pfu_aug1.0_25020.1_33481.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25020.1_33481.t1 gcggatgatctcacagaggatcaaatctcaggtaatggagaggtagatttttacgaattcttggccatgatggctaagaa aatgaaagataccgactcggaagaggaaataaaagaagcgttcagagtgtttgacacaagcgggaaaggctttataactg cgcaggaactgagacacattatgttgaatttcggcgagaaaatggaggaggaggatgccgacgagatggtagccgctgct gatattgacggggatggggagattaattatgaggtgcacaattttgaagaaagtgtcttctttttcatattgcaggcgga ggatctcacagaagaacaaatcgcagaattaaaacatataatgacgacactgggtgagaaaatggacgacgaagaagcag aagagatggtagcggctgcagatattgatggagatggagaaataaattatgaggagtttgtcaaaatgatttcaatgaaa gacaccgatcaagaagaacagcaacaagaaaataaatga |
|
Protein
| Protein ID | pfu_aug1.0_25020.1_33481.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25020.1_33481.t1 ADDLTEDQISGNGEVDFYEFLAMMAKKMKDTDSEEEIKEAFRVFDTSGKGFITAQELRHIMLNFGEKMEEEDADEMVAAA DIDGDGEINYEVHNFEESVFFFILQAEDLTEEQIAELKHIMTTLGEKMDDEEAEEMVAAADIDGDGEINYEEFVKMISMK DTDQEEQQQENK |
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