Gene
| Gene Model ID | pfu_aug1.0_2506.1_51706 |
|---|---|
| Locus | scaffold2506.1 : 49406 ... 83144 : + |
| To GenomeBrowser | scaffold2506.1:49406..83144 |
| Genes list of scaffold | scaffold2506.1 |
| Synonym | pfu_aug2.0_401.1_04104 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2506.1_51706.t1 | 2 | 1 | PH | 548 | 636 | 3.1e-10 | 40.1 | 0.00013 | 0.49 | 10.6 |
| pfu_aug1.0_2506.1_51706.t1 | 2 | 2 | PH | 752 | 832 | 3.1e-10 | 40.1 | 2.4e-09 | 8.8e-06 | 25.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2506.1_51706.t1 | gi|296212602|ref|XP_002752914.1| | PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6 [Callithrix jacchus] | 2.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-Dshape | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2506.1_51706.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2506.1_51706.t1 atgatggagacttcattccttttgcaatatgatggactgtccaaaccaaaacccaaggtaccattaaaacctcctgttgc taagaaaccaacatctccacctagccaatcaggtacagatcgtccaggggaaccccctccagataagaggaagccacccc cacctctacctcgcacccctcccaaaggctcaggaaaacctcctcctcccaagccacgaacaacgagactatccagagaa aacagcctgcaaaatgtgagctccgaaaagtgtgataatggtgaccaaactgtggaaactattggtaccaagtgtagaag tcttggtgagagtagtgaaaatttatcagaaatagcacacactgaaaaatgtagcacaagtcaagcacaacctgaggaca cttcacacctcgcacaaaatttaaaccaggatgcatcacaacctgtcaacaaccttaaccaaagggaacctttatcaagt actgtaaatcagcccagtgatatttctgctgtaaataaccttggtgcacaaaattctagctcttcccttcaacctacaga gaaaaattcaccaacccaacccaaagtttctccaaaagtagcccctaaaccacgaggtccaaaacctacacaaaatggag tgaatgtaacatcgaactctgaccctattaagaaaaagtcagatgatattctacatgactcattcaatgtttcgttggga attataataccgcctgcagtcagtaaacgaatttgtcctccaaaaccaaaacgcaacaagcttgcaaatcgcagcgtctc tgatgtaggctgcttgagatctcgacctttacaaagtaaaggagagatagatgttgattttgtagatgaaagtagttctg taaaaggaacaaaagaagtacctcctacagtgccaagacgtcaaaggagcattactgttgacttttgtgttccagccaat caacatgctttattacgagaaattgcattggctgatcacaaaaaaggactgaccaatcaggaaagcagttcaagagacca atctctagaaaggaggaaaccaagacctacaagaaaagctcctccaccgccaaaaaaggtaataaatcctaataaaacag actatgatggaatcagttctgatgaacatgatcatgagtacctagaaataccggaatcttttatccatcaacatatgttg aattctagtgcatctcctgaaggatcatcagtgctcagtagcggagatcaaacactaccggtaccgccagaattaccgcc aagaaattcaatgtctccacaaagctctattgatacagcctctccacgattatcaggaatctcgccgctagcgtcagaag ttagcagcagtacatcagatctgcataataaacatgaccgtccattgagtagagtcagcaccaacagtgtactgagcagt aactcagaaaacgagtcaatgtgtcagtttgagaataatgagttgagtacatcagagtcagaggatgaggaccttgaaga taaaatggaccaggagtattccctctttgcgattttacagtcctacgttcgatttgtgcaggaccaagttcagaagatgt tagaaattcagaaatctctggatggcaactttgaggtcatcaaaccaggcagaacaccgccgcgcgctataatttgccgc cgacgagacgtttttattgcaacttcagaaaaaaatatccgccgtgtctcatcctcgatatccatttatttcattgaaca tgtttattgtcctgtaaaatcgtcaaaactgtacctgatgaatgaatactttaaaagcccgtataaatcacggcgcgttc cgtatttacgttacggaacaatcaaagaaagagatgaatgggtgatagctttacagagtgccataagtgaaaatgcacag agaaagaaaacatttgacacaagggtcgacaatcaggttctgtgttctaactgctcagacaataaagctcccctggagta ccttagaaacaaaccagctcgtgtgtgtgacgagtgttattcacagctgaaagcagccatagaaggaaagaggcgttcct ccagtcttacagacagtgtaactcatgatacggatggatcattgctcagccttggtaatttactagaaaggttccaacag atcagaaaaagtgccaggtttacaccaaagttcaacatccgcagacctgcaaggctgaaagaggtacatgcaaatgacac tggttcgtcaatcagtggttacctgaagattctgaaaggaaagaaatggaagaaattctggtttgtcttaaaagacaaag ttctctacacttataaagctagtaatgacatggcagcagttgaaagtatgccggtagttggatatgtagtgggatcactt aatcaggtccatgaaggatgtaagccatcagttctgtttcaacttatccataagaatcgtccggccattatatttcaagc tgaagatgaagaggctaataagagaatttcacgaaaccttacagataagcaagtactcaaggtcctcaagttatggaagt tctacggttga |
|
Protein
| Protein ID | pfu_aug1.0_2506.1_51706.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2506.1_51706.t1 MMETSFLLQYDGLSKPKPKVPLKPPVAKKPTSPPSQSGTDRPGEPPPDKRKPPPPLPRTPPKGSGKPPPPKPRTTRLSRE NSLQNVSSEKCDNGDQTVETIGTKCRSLGESSENLSEIAHTEKCSTSQAQPEDTSHLAQNLNQDASQPVNNLNQREPLSS TVNQPSDISAVNNLGAQNSSSSLQPTEKNSPTQPKVSPKVAPKPRGPKPTQNGVNVTSNSDPIKKKSDDILHDSFNVSLG IIIPPAVSKRICPPKPKRNKLANRSVSDVGCLRSRPLQSKGEIDVDFVDESSSVKGTKEVPPTVPRRQRSITVDFCVPAN QHALLREIALADHKKGLTNQESSSRDQSLERRKPRPTRKAPPPPKKVINPNKTDYDGISSDEHDHEYLEIPESFIHQHML NSSASPEGSSVLSSGDQTLPVPPELPPRNSMSPQSSIDTASPRLSGISPLASEVSSSTSDLHNKHDRPLSRVSTNSVLSS NSENESMCQFENNELSTSESEDEDLEDKMDQEYSLFAILQSYVRFVQDQVQKMLEIQKSLDGNFEVIKPGRTPPRAIICR RRDVFIATSEKNIRRVSSSISIYFIEHVYCPVKSSKLYLMNEYFKSPYKSRRVPYLRYGTIKERDEWVIALQSAISENAQ RKKTFDTRVDNQVLCSNCSDNKAPLEYLRNKPARVCDECYSQLKAAIEGKRRSSSLTDSVTHDTDGSLLSLGNLLERFQQ IRKSARFTPKFNIRRPARLKEVHANDTGSSISGYLKILKGKKWKKFWFVLKDKVLYTYKASNDMAAVESMPVVGYVVGSL NQVHEGCKPSVLFQLIHKNRPAIIFQAEDEEANKRISRNLTDKQVLKVLKLWKFYG |
|