Gene
| Gene Model ID | pfu_aug1.0_2511.1_15846 |
|---|---|
| Locus | scaffold2511.1 : 7436 ... 30195 : - |
| To GenomeBrowser | scaffold2511.1:7436..30195 |
| Genes list of scaffold | scaffold2511.1 |
| Synonym | pfu_aug2.0_116.1_20263 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2511.1_15846.t1 | 1 | 1 | ERGIC_N | 1 | 50 | 1.9e-13 | 50.2 | 6.2e-17 | 4.6e-13 | 48.9 |
| pfu_aug1.0_2511.1_15846.t1 | 2 | 1 | COPIIcoated_ERV | 30 | 61 | 1.1e-17 | 64.4 | 0.18 | 1300.0 | -1.3 |
| pfu_aug1.0_2511.1_15846.t1 | 2 | 2 | COPIIcoated_ERV | 77 | 150 | 1.1e-17 | 64.4 | 3.3e-21 | 2.5e-17 | 63.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2511.1_15846.t1 | gi|169731514|gb|ACA64886.1| | endoplasmic reticulum-Golgi intermediate compartment protein 3 (predicted) [Callicebus moloch] | 4.0e-35 |
Transcript
| Transcript ID | pfu_aug1.0_2511.1_15846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2511.1_15846.t1 atgctgacactgtttgtatcggaactgaactattacctgacaactgacgtacagccagagctgtttgtggatactactag gggacagaagatcaaaatcaacataaatatgacttttaacaaaataccatgtgcttttcatgatctgcaagcatttggag gtcaaaagctagaaatgtacttccctgtgcatcaaggatgtaccttattgattttgagattcaaaggtcaagattcaatg atgttctcatactatatcaaagttgttccaaccacctatgttaaggtcgatggaaaaacactttacaccaaccaatattc agttaccaagcattccaaagtggtcggaggtagcacaggggaaacaggattaccgggggcattttttatatatgagttat ctcccatgatggtaaaatacacagaaaaacgtagaacgtgtaaaattcagttactaaggctaatgttgccatgcgagtct aatgacgtcatagttcaaatcaagccaccgcgtcttcacattaataaccacagtggaaattctatacaaatgaatgggta a |
|
Protein
| Protein ID | pfu_aug1.0_2511.1_15846.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2511.1_15846.t1 MLTLFVSELNYYLTTDVQPELFVDTTRGQKIKININMTFNKIPCAFHDLQAFGGQKLEMYFPVHQGCTLLILRFKGQDSM MFSYYIKVVPTTYVKVDGKTLYTNQYSVTKHSKVVGGSTGETGLPGAFFIYELSPMMVKYTEKRRTCKIQLLRLMLPCES NDVIVQIKPPRLHINNHSGNSIQMNG |
|