Gene
| Gene Model ID | pfu_aug1.0_25155.1_62356 |
|---|---|
| Locus | scaffold25155.1 : 1 ... 5625 : - |
| To GenomeBrowser | scaffold25155.1:1..5625 |
| Genes list of scaffold | scaffold25155.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI XP_003214458.1 (Anolis carolinensis) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_25155.1_62356.t1 | 2 | 1 | SPARC_Ca_bdg | 6 | 81 | 5.2e-07 | 29.6 | 3.4e-06 | 0.0031 | 17.5 |
| pfu_aug1.0_25155.1_62356.t1 | 2 | 1 | EF-hand_7 | 24 | 83 | 2.2e-30 | 104.5 | 1.6e-17 | 1.5e-14 | 53.9 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 1 | EF-hand_1 | 24 | 50 | 9.1e-29 | 96.5 | 4.7e-08 | 4.4e-05 | 22.4 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 1 | EF-hand_6 | 24 | 51 | 1.3e-21 | 74.4 | 7.4e-09 | 6.8e-06 | 25.5 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 1 | EF-hand_5 | 24 | 46 | 2.6e-20 | 70.7 | 4.6e-06 | 0.0043 | 16.3 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 1 | EF-hand_8 | 27 | 44 | 4.9e-23 | 80.4 | 0.0003 | 0.28 | 10.8 |
| pfu_aug1.0_25155.1_62356.t1 | 2 | 1 | EF-hand_9 | 27 | 81 | 3.9e-07 | 29.8 | 2.0e-07 | 0.00019 | 21.2 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 2 | EF-hand_8 | 49 | 86 | 4.9e-23 | 80.4 | 6.6e-12 | 6.1e-09 | 35.3 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 2 | EF-hand_1 | 59 | 85 | 9.1e-29 | 96.5 | 3.6e-11 | 3.3e-08 | 32.2 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 2 | EF-hand_6 | 60 | 84 | 1.3e-21 | 74.4 | 1.2e-06 | 0.0011 | 18.6 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 2 | EF-hand_5 | 60 | 83 | 2.6e-20 | 70.7 | 1.5e-08 | 1.4e-05 | 24.2 |
| pfu_aug1.0_25155.1_62356.t1 | 2 | 2 | SPARC_Ca_bdg | 80 | 151 | 5.2e-07 | 29.6 | 0.00014 | 0.13 | 12.2 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 3 | EF-hand_8 | 97 | 112 | 4.9e-23 | 80.4 | 0.0073 | 6.8 | 6.3 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 3 | EF-hand_1 | 98 | 125 | 9.1e-29 | 96.5 | 8.7e-11 | 8.0e-08 | 31.0 |
| pfu_aug1.0_25155.1_62356.t1 | 2 | 2 | EF-hand_7 | 99 | 152 | 2.2e-30 | 104.5 | 3.2e-17 | 2.9e-14 | 52.9 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 3 | EF-hand_6 | 99 | 127 | 1.3e-21 | 74.4 | 5.6e-10 | 5.2e-07 | 29.0 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 3 | EF-hand_5 | 100 | 120 | 2.6e-20 | 70.7 | 1.1e-08 | 1.0e-05 | 24.6 |
| pfu_aug1.0_25155.1_62356.t1 | 2 | 2 | EF-hand_9 | 101 | 147 | 3.9e-07 | 29.8 | 0.0069 | 6.4 | 6.7 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 4 | EF-hand_8 | 111 | 152 | 4.9e-23 | 80.4 | 3.4e-13 | 3.2e-10 | 39.4 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 4 | EF-hand_1 | 134 | 152 | 9.1e-29 | 96.5 | 3.8e-07 | 0.00035 | 19.6 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 4 | EF-hand_5 | 138 | 151 | 2.6e-20 | 70.7 | 3.5e-05 | 0.033 | 13.5 |
| pfu_aug1.0_25155.1_62356.t1 | 4 | 4 | EF-hand_6 | 140 | 151 | 1.3e-21 | 74.4 | 0.015 | 14.0 | 5.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_25155.1_62356.t1 | gi|354478483|ref|XP_003501444.1| | 9.99967e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_25155.1_62356.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25155.1_62356.t1 atgaagctggcacgtcaagaattgaataagaacgaggtttctcaactaactgaagaaaaaaggaaagttttaaaagacgc attcaacttatttgatgcgagaggagatggaaggattgattcaacagagattggtaacgtaatgagagcatttggacata atccgactgacgctgaaattcgggacatgatccagagagtagacgaagacggcgatggaacgatagactttgacgaattt atagagttagctcaaaggaaagaggagcaggggaaacaggaccctaaaacagacattgaaaatgcatttagagtgttcga caaggacgggaatggatttataactgccgctgaattacgtataacgatgacgaatctcggagaaaaactcacagacaagg aggttgacgagatgatacaagcggttgatgtagacggggatggtcggataaactatga |
|
Protein
| Protein ID | pfu_aug1.0_25155.1_62356.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25155.1_62356.t1 MKLARQELNKNEVSQLTEEKRKVLKDAFNLFDARGDGRIDSTEIGNVMRAFGHNPTDAEIRDMIQRVDEDGDGTIDFDEF IELAQRKEEQGKQDPKTDIENAFRVFDKDGNGFITAAELRITMTNLGEKLTDKEVDEMIQAVDVDGDGRINY |
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