Gene
| Gene Model ID | pfu_aug1.0_25175.1_19060 |
|---|---|
| Locus | scaffold25175.1 : 2268 ... 14152 : - |
| To GenomeBrowser | scaffold25175.1:2268..14152 |
| Genes list of scaffold | scaffold25175.1 |
| Synonym | pfu_aug2.0_54.1_13489 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_25175.1_19060.t1 | 1 | 1 | R3H-assoc | 13 | 101 | 1.2e-19 | 70.5 | 4.5e-23 | 2.2e-19 | 69.6 |
| pfu_aug1.0_25175.1_19060.t1 | 1 | 1 | R3H | 112 | 165 | 3.3e-08 | 33.0 | 1.2e-11 | 6.0e-08 | 32.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_25175.1_19060.t1 | gi|348523111|ref|XP_003449067.1| | PREDICTED: R3H domain-containing protein 4-like [Oreochromis niloticus] | 4.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_25175.1_19060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25175.1_19060.t1 aagatggatttgagctggattttgatatctgtgaaccaactgtttctgcttttgcagagctatttgctgaacaggagaaa atgaaagtgtggaatgatttcatcaactgctctgaggaggaacaggagaggattcttcatggaacaaagtcctcaaagac tgaggaagctgaggatgatagagaggatgagaagttggatgattcatgggagaaaatccctgatcaaagaaaaacccatc ctgcttacactgctgaggaatgctttcatagaatcgacaagaacatcagatcttatctcaaacggagacaaatgccgttg ggccttctgaagtgcttggaggatgaagtgacagcattcttccgggagtggccttcctctgtgtatgtatcagacctaca aactagctttgagaggatgaatttacatgcactatgtcagtatatggatctcaggtctcatagttatgatgaagatggca atcgtcgtactcaggtcgaaaataaacatcagcatttctgtcctcccgctacactcctgacatcctacctacaaaaaggt ggatcatcatga |
|
Protein
| Protein ID | pfu_aug1.0_25175.1_19060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25175.1_19060.t1 DGFELDFDICEPTVSAFAELFAEQEKMKVWNDFINCSEEEQERILHGTKSSKTEEAEDDREDEKLDDSWEKIPDQRKTHP AYTAEECFHRIDKNIRSYLKRRQMPLGLLKCLEDEVTAFFREWPSSVYVSDLQTSFERMNLHALCQYMDLRSHSYDEDGN RRTQVENKHQHFCPPATLLTSYLQKGGSS |
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