Gene
| Gene Model ID | pfu_aug1.0_2524.1_08337 |
|---|---|
| Locus | scaffold2524.1 : 21766 ... 57391 : + |
| To GenomeBrowser | scaffold2524.1:21766..57391 |
| Genes list of scaffold | scaffold2524.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2524.1_08337.t1 | 3 | 1 | RNA_pol_Rpb1_1 | 1 | 33 | 5.6e-38 | 131.0 | 0.0043 | 16.0 | 4.6 |
| pfu_aug1.0_2524.1_08337.t1 | 3 | 2 | RNA_pol_Rpb1_1 | 33 | 231 | 5.6e-38 | 131.0 | 9.1e-35 | 3.4e-31 | 108.7 |
| pfu_aug1.0_2524.1_08337.t1 | 3 | 3 | RNA_pol_Rpb1_1 | 231 | 252 | 5.6e-38 | 131.0 | 2.1e-08 | 7.8e-05 | 22.0 |
| pfu_aug1.0_2524.1_08337.t1 | 2 | 1 | RNA_pol_Rpb1_2 | 254 | 277 | 3.0e-27 | 95.5 | 5.8e-09 | 2.1e-05 | 24.5 |
| pfu_aug1.0_2524.1_08337.t1 | 2 | 2 | RNA_pol_Rpb1_2 | 276 | 322 | 3.0e-27 | 95.5 | 4.5e-23 | 1.7e-19 | 70.4 |
| pfu_aug1.0_2524.1_08337.t1 | 1 | 1 | RNA_pol_Rpb1_3 | 326 | 500 | 2.29953e-42 | 144.3 | 1.4013e-45 | 6.09985e-42 | 143.0 |
| pfu_aug1.0_2524.1_08337.t1 | 2 | 1 | RNA_pol_Rpb1_5 | 525 | 554 | 3.5e-24 | 85.5 | 6.9e-08 | 0.00026 | 20.3 |
| pfu_aug1.0_2524.1_08337.t1 | 2 | 2 | RNA_pol_Rpb1_5 | 765 | 861 | 3.5e-24 | 85.5 | 2.3e-20 | 8.5e-17 | 61.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2524.1_08337.t1 | gi|332250771|ref|XP_003274523.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2524.1_08337.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2524.1_08337.t1 atgcagcagctgtcccaccttcatgtggtcagtaaaaatctgtacagtcaagatggcagtcataaaccagtacagtatgg accactcgatcataaaatggactgcagtcgaattctcctaactcctgatcagagaaagactttcctagacaatgtgaaaa ctccgcttacttacctacagagaaaagtactgaaaaagaaaatctacgacaagtgcagaaaaatatcagtatgtccctca tgcagagcgtacaatggtatggtgaagaaatgtggccttctgaaaataatacatgatagatacaagtcaacaaggaaagg aaacgaagctatgattgcagaatttatgggctcgttcaccgatgcattggaacacaacaaagatttagaacctctcctaa gcaaaactcaggaagccctcaatccaattattgtacaaaagttgttcaaaagaatagatgaagaggacataccgttgctg ttgatgaattgtgacattggccatccctccgaccttatacttacccgtatactggtgccacctatatgtatcagaccctc agtggtgtccgaccttaagtctggaacgaatgaagacgatataacgatgaagatgacagagatactttttctaaatgatg taatacagaagcacaaggccactggtgccaaaatgtccatgattatgccaaagaaaagtactagaggatttgtgcaacga ctgaaaggaaaacagggtcgtttccgtggcaacttgtcaggaaaacgtgtcgatttctcaggaagaacagtcatatctcc ggatcccaacatgagaatagatcaagccaaagtaatgccacacaggaccttcagatttaacgagtgttgctgtaatccat ttaacgctgattttgacggtgacgagatgaatcttcatctaccacagacagaggaagccaaagcagaagctatcatactt atggggtctaagtcaaatatcatcactccacgtaatggggaaccacttattgcagcaatccaagatttcatcactggtgg ttacctgattactcagaaggatgttttcctggatagggcgagggcttgtcaactcatatctgccatgttatcacaaaggg acactgccatgaaaatcgacctacctccccctgcaattttcaagcctgtgaagctgtggacagggaaacagatatttagt gtacttttaaggccgaataagaaagatcctgtcatggtgaatctgaggacgaggggaaaaaactactccagcaatgaaga cttgtgtgtcaatgactcatttgttgtggttcgtaacagtgagttactgtgtggagccatggacaaaggcacgttaggtt cgggatccaagaataacatattctacattatactgagagactttggagagcagaaagcagctgatacactgtccagactg gcaaggctttgtcctgcttatctgagtcacaggggtttctccataggaataggtgatgtcactccaggagatgggcttat caaggccaaaaacttactgctggaagatggattaagaggagtatcagattatcagtcacttgaagatctgtgttcacact atgatctgactgtccgttcgtccaccaatgacatcgtacagtttacgtatggcggtgatagcttagatccagcctctatg gaagggaaggacagacctatagactttcagagagtctttgatcatgtcaaggctaacatcaggatagactgtcatgatga accgtccctcagcgggccagagctagacaagattgtgtatgagaaattagagactaaaacttataatcaacttagccagg agttcaagggagatctgaaggagtttattgatggcatttcacagaaaataacaaaaacaagggatagatttggagtacac ggtaaaatcaggcaacatattcctccagcaagattcatgtatgacgtcataattgacgttacagttaaaaggcacgtgaa aatgtcatcttacccaataggggtgtcagagtacattgaagaagtttttctaccagatgactgctttatacttgtcaaac tggatcaggacagaatcaaacttctaaagcttgaagtgaatgtggacagcatcaaagaatccatctgcaaaagtaaatta cgagtcaaacctcaagatatacaagttcacagtgaggcagtgctgactgtacatccaagagaaacgtctaaaagttcctt gtactatgtactacaaactctgaagaaagaacttggaggtgtcatgatcaagggtgttcagaatgtcagcagggctgtta tacatgtagatgagaagaaaggaaatagttacaagcttctggtagagggagacaacttgctggcggtaatggcaacacca ggtattaagggaacccatgctttctcaaacaatacatttgcaatggagaagactctaggcatcgaagcagcacgtacgac catcataaacgaagtagtgtatactatgtctagtcatggaatgagcattgatattcgtcatgtgatgttactggctgacc tcatgaccttcaaggttgaactaatatacacgtag |
|
Protein
| Protein ID | pfu_aug1.0_2524.1_08337.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2524.1_08337.t1 MQQLSHLHVVSKNLYSQDGSHKPVQYGPLDHKMDCSRILLTPDQRKTFLDNVKTPLTYLQRKVLKKKIYDKCRKISVCPS CRAYNGMVKKCGLLKIIHDRYKSTRKGNEAMIAEFMGSFTDALEHNKDLEPLLSKTQEALNPIIVQKLFKRIDEEDIPLL LMNCDIGHPSDLILTRILVPPICIRPSVVSDLKSGTNEDDITMKMTEILFLNDVIQKHKATGAKMSMIMPKKSTRGFVQR LKGKQGRFRGNLSGKRVDFSGRTVISPDPNMRIDQAKVMPHRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAIIL MGSKSNIITPRNGEPLIAAIQDFITGGYLITQKDVFLDRARACQLISAMLSQRDTAMKIDLPPPAIFKPVKLWTGKQIFS VLLRPNKKDPVMVNLRTRGKNYSSNEDLCVNDSFVVVRNSELLCGAMDKGTLGSGSKNNIFYIILRDFGEQKAADTLSRL ARLCPAYLSHRGFSIGIGDVTPGDGLIKAKNLLLEDGLRGVSDYQSLEDLCSHYDLTVRSSTNDIVQFTYGGDSLDPASM EGKDRPIDFQRVFDHVKANIRIDCHDEPSLSGPELDKIVYEKLETKTYNQLSQEFKGDLKEFIDGISQKITKTRDRFGVH GKIRQHIPPARFMYDVIIDVTVKRHVKMSSYPIGVSEYIEEVFLPDDCFILVKLDQDRIKLLKLEVNVDSIKESICKSKL RVKPQDIQVHSEAVLTVHPRETSKSSLYYVLQTLKKELGGVMIKGVQNVSRAVIHVDEKKGNSYKLLVEGDNLLAVMATP GIKGTHAFSNNTFAMEKTLGIEAARTTIINEVVYTMSSHGMSIDIRHVMLLADLMTFKVELIYT |
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