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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_253.1_00206
Locus scaffold253.1 : 33787 ... 37855 : -
To GenomeBrowser scaffold253.1:33787..37855
Genes list of scaffold scaffold253.1
Synonym NA

Manual annotation
Study fieldEnvironmental Response
Gene nameG-protein coupled receptor
DescriptionSimilar (28%) to XP_002403479.1| G-protein coupled octopamine receptor, putative [Ixodes scapularis
mRNA evidence

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_253.1_00206.t1 1 1 7TM_GPCR_Srsx 79 326 4.2e-08 32.6 1.0e-11 7.4e-08 31.8
pfu_aug1.0_253.1_00206.t1 1 1 7tm_1 84 350 1.7e-32 112.5 3.4e-36 2.5e-32 112.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_253.1_00206.t1 gi|240980460|ref|XP_002403479.1| G-protein coupled octopamine receptor, putative [Ixodes scapularis] 2.0e-18

Transcript
Transcript IDpfu_aug1.0_253.1_00206.t1
Definition-
>pfu_aug1.0_253.1_00206.t1
atggacacgactacctcgatatggagctatgcagaaagcctgataaacgacacagtagtagacaccacggtgattccctt
caaccagaacaccacaggtctcggcttgtatacaaacttcgtcagttacataaactctactacatgggccaatctacagc
ctcagaatttccaagatcgtgcagacaagatcctaaaacagccagacacaattgtcagattaatcttgtgcagtctggct
ctagtcacaaacattctctccataatggctaccgctaacatcccgaaaggactatcgatgcattccaaattaatcataag
cttagccattgcagatatgatagtacctattagtatttttatgtatatactcaacaaagtgttgaacactccgaaagtcg
gtcgtctgttcacgccggaagaaaggttgtcgtctgcgtgcatgtttcagtttgtcaattcgatcaacgtcatggctcat
cttatttctttgttcaatctttttgcaatggctctggaccactacattgctattatgaaaccacttcactatattcatat
catgaatagatttcgaggaaatttgctcattatagttttgtgggtcactgccttcgctggtggattttctagctttctag
ctggatttacgggtccagacaaaaatgacagatacctgaacttctgtgagaagatattttccgctgagtatcaagcagaa
tacattcccgtagtagctacattcatttgtttgggattgattttattcatttacatacgaatttatttcgaagtgaaaag
tatggcagcaaatgtggcaccgtttgaaaacgacgagatgcacaacaacaaagcgcgatggacgaccttagtgatcatcg
gaacgtttgtcgtctgctggttgccctatatgacctttcaagttgtcatggtgatacaaatacacatcgattccgaatct
gtgcagaaactttttgctatattcctcaagacgaacaagtatttatatgccttacttcttgtgaattgtattctggaccc
tataatttatgccgtgcgactaaaacacgtgcaacagggatatatacacatgcttgcgcggtgctccaaagtctatcgga
ggaaaatacacgaggaagaagtaagcttgtcaaatcccgccttttcgatgtcaaggaaaaaatctgacatcacaggacga
atgtcaatttcacatggacatttcggaaatgacgtcaacgaagtgaatgaactgacacccatgaatgaggaaaggactga
attcagtgagctaaattcatctatgaatgggaatgtcgacagccgcgaatatacgaaggttgtcattaacgacagcaatc
ataattacgcaaattgctcaagacaagatattgaaaatgtatcatag

Protein
Protein IDpfu_aug1.0_253.1_00206.t1
Definition-
>pfu_aug1.0_253.1_00206.t1
MDTTTSIWSYAESLINDTVVDTTVIPFNQNTTGLGLYTNFVSYINSTTWANLQPQNFQDRADKILKQPDTIVRLILCSLA
LVTNILSIMATANIPKGLSMHSKLIISLAIADMIVPISIFMYILNKVLNTPKVGRLFTPEERLSSACMFQFVNSINVMAH
LISLFNLFAMALDHYIAIMKPLHYIHIMNRFRGNLLIIVLWVTAFAGGFSSFLAGFTGPDKNDRYLNFCEKIFSAEYQAE
YIPVVATFICLGLILFIYIRIYFEVKSMAANVAPFENDEMHNNKARWTTLVIIGTFVVCWLPYMTFQVVMVIQIHIDSES
VQKLFAIFLKTNKYLYALLLVNCILDPIIYAVRLKHVQQGYIHMLARCSKVYRRKIHEEEVSLSNPAFSMSRKKSDITGR
MSISHGHFGNDVNEVNELTPMNEERTEFSELNSSMNGNVDSREYTKVVINDSNHNYANCSRQDIENVS

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