Gene
| Gene Model ID | pfu_aug1.0_25410.1_26245 |
|---|---|
| Locus | scaffold25410.1 : 4189 ... 5305 : - |
| To GenomeBrowser | scaffold25410.1:4189..5305 |
| Genes list of scaffold | scaffold25410.1 |
| Synonym | pfu_aug2.0_1224.1_14883 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_25410.1_26245.t1 | 6 | 1 | WD40 | 19 | 50 | 0.0 | 160.5 | 1.0e-13 | 2.5e-10 | 39.8 |
| pfu_aug1.0_25410.1_26245.t1 | 4 | 1 | Nup160 | 35 | 57 | 2.4e-07 | 29.2 | 0.063 | 160.0 | 0.1 |
| pfu_aug1.0_25410.1_26245.t1 | 6 | 2 | WD40 | 58 | 93 | 0.0 | 160.5 | 2.8e-11 | 6.8e-08 | 32.1 |
| pfu_aug1.0_25410.1_26245.t1 | 4 | 2 | Nup160 | 74 | 99 | 2.4e-07 | 29.2 | 0.00072 | 1.8 | 6.6 |
| pfu_aug1.0_25410.1_26245.t1 | 6 | 3 | WD40 | 98 | 133 | 0.0 | 160.5 | 7.1e-09 | 1.8e-05 | 24.4 |
| pfu_aug1.0_25410.1_26245.t1 | 4 | 3 | Nup160 | 113 | 144 | 2.4e-07 | 29.2 | 0.00011 | 0.27 | 9.3 |
| pfu_aug1.0_25410.1_26245.t1 | 6 | 4 | WD40 | 137 | 189 | 0.0 | 160.5 | 1.2e-08 | 3.1e-05 | 23.6 |
| pfu_aug1.0_25410.1_26245.t1 | 4 | 4 | Nup160 | 167 | 201 | 2.4e-07 | 29.2 | 8.6e-05 | 0.21 | 9.6 |
| pfu_aug1.0_25410.1_26245.t1 | 6 | 5 | WD40 | 193 | 231 | 0.0 | 160.5 | 1.2e-13 | 3.0e-10 | 39.5 |
| pfu_aug1.0_25410.1_26245.t1 | 6 | 6 | WD40 | 237 | 253 | 0.0 | 160.5 | 0.00062 | 1.5 | 8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_25410.1_26245.t1 | gi|291224328|ref|XP_002732157.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_25410.1_26245.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25410.1_26245.t1 atgggtggatgtggttcgaaagggaaatctggcaaaaactgccttatggaaagtgtggaagcgcacgaaaaaggtataaa ttgtatggcattaagcgaagatggatcggttttggcaactggaagtgaggacagaacgattaaactttggtgcacaaaga cgagcgaatgtgaatgtatcgggattttacgcggacatgacgactacataacttgtatcttgatcgaagactgttatgta atttccggaagtgcggacaaaagtatccgaaaatgggacgtaagcacgtgcgagtgcgtgctagtttgtcgaggtcatac ttctgtaatataccgaatgatttgtacgggtgactttattttctccagttcctacgacagaacggctagatgctgggact ttgacaatggcgaatgtttgagagttttccggggtcacaaacgcggtgtttacccgctaattttcatcccagcagacgat gatgacaacacggacgaccttgatcccgacgcgaataaagacttactgatcacgggatctgcggattcgaccgcccgatc ttggaatttcgaaactggacagtgtctacaggtgtttaagggacatacaggggcggtaacctgcatggcaaccgataatc tcggacgaattctcttcaccggaagtgtggacttcaccatcagaagttgggatctgcttaaaggtgtacaaatgaaagtg ttcgaggggcatactggatcagtcatctgtatgcaggtgtgtatagaaaattatattctggaaaatcaaaacaaaacata a |
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Protein
| Protein ID | pfu_aug1.0_25410.1_26245.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25410.1_26245.t1 MGGCGSKGKSGKNCLMESVEAHEKGINCMALSEDGSVLATGSEDRTIKLWCTKTSECECIGILRGHDDYITCILIEDCYV ISGSADKSIRKWDVSTCECVLVCRGHTSVIYRMICTGDFIFSSSYDRTARCWDFDNGECLRVFRGHKRGVYPLIFIPADD DDNTDDLDPDANKDLLITGSADSTARSWNFETGQCLQVFKGHTGAVTCMATDNLGRILFTGSVDFTIRSWDLLKGVQMKV FEGHTGSVICMQVCIENYILENQNKT |
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