Gene
| Gene Model ID | pfu_aug1.0_254113.1_64897 |
|---|---|
| Locus | scaffold254113.1 : 1 ... 618 : - |
| To GenomeBrowser | scaffold254113.1:1..618 |
| Genes list of scaffold | scaffold254113.1 |
| Synonym | pfu_aug2.0_231.1_03846 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_254113.1_64897.t1 | 5 | 1 | zf-H2C2_2 | 1 | 21 | 2.2e-28 | 97.1 | 2.8e-09 | 3.0e-06 | 27.2 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 1 | zf-C2H2_4 | 11 | 34 | 1.2e-21 | 75.3 | 1.2e-06 | 0.0012 | 18.9 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 1 | zf-C2H2 | 11 | 33 | 6.2e-21 | 73.4 | 1.6e-07 | 0.00017 | 21.6 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 1 | zf-C2H2_jaz | 11 | 31 | 1.3e-09 | 37.9 | 0.00015 | 0.16 | 12.1 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 1 | zf-met | 11 | 30 | 1.8e-09 | 37.4 | 0.00055 | 0.58 | 10.4 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 2 | zf-H2C2_2 | 25 | 48 | 2.2e-28 | 97.1 | 1.4e-07 | 0.00015 | 21.9 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 2 | zf-C2H2_4 | 40 | 62 | 1.2e-21 | 75.3 | 9.0e-06 | 0.0095 | 16.2 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 2 | zf-C2H2 | 40 | 62 | 6.2e-21 | 73.4 | 0.001 | 1.1 | 9.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 2 | zf-met | 40 | 48 | 1.8e-09 | 37.4 | 0.13 | 140.0 | 2.9 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 2 | zf-C2H2_jaz | 41 | 48 | 1.3e-09 | 37.9 | 0.57 | 600.0 | 0.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 3 | zf-H2C2_2 | 54 | 78 | 2.2e-28 | 97.1 | 2.2e-07 | 0.00023 | 21.2 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 3 | zf-C2H2_4 | 68 | 90 | 1.2e-21 | 75.3 | 9.3e-06 | 0.0098 | 16.1 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 3 | zf-C2H2 | 68 | 90 | 6.2e-21 | 73.4 | 7.3e-06 | 0.0077 | 16.5 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 3 | zf-C2H2_jaz | 68 | 90 | 1.3e-09 | 37.9 | 0.0077 | 8.1 | 6.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 3 | zf-met | 68 | 87 | 1.8e-09 | 37.4 | 0.00039 | 0.41 | 10.9 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 4 | zf-H2C2_2 | 84 | 106 | 2.2e-28 | 97.1 | 6.3e-07 | 0.00066 | 19.8 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 4 | zf-C2H2_4 | 96 | 118 | 1.2e-21 | 75.3 | 5.3e-07 | 0.00056 | 20.0 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 4 | zf-C2H2 | 96 | 118 | 6.2e-21 | 73.4 | 1.4e-06 | 0.0015 | 18.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 4 | zf-C2H2_jaz | 96 | 115 | 1.3e-09 | 37.9 | 0.00041 | 0.43 | 10.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 4 | zf-met | 96 | 116 | 1.8e-09 | 37.4 | 3.7e-05 | 0.039 | 14.1 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 5 | zf-H2C2_2 | 110 | 134 | 2.2e-28 | 97.1 | 1.0e-08 | 1.1e-05 | 25.5 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 5 | zf-C2H2_jaz | 123 | 143 | 1.3e-09 | 37.9 | 1.0e-06 | 0.0011 | 19.0 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 5 | zf-C2H2_4 | 124 | 146 | 1.2e-21 | 75.3 | 2.2e-06 | 0.0024 | 18.0 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 5 | zf-C2H2 | 124 | 146 | 6.2e-21 | 73.4 | 1.5e-07 | 0.00016 | 21.7 |
| pfu_aug1.0_254113.1_64897.t1 | 5 | 5 | zf-met | 124 | 143 | 1.8e-09 | 37.4 | 0.0032 | 3.4 | 8.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_254113.1_64897.t1 | gi|334327705|ref|XP_003340980.1| | 9.0e-31 |
Transcript
| Transcript ID | pfu_aug1.0_254113.1_64897.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_254113.1_64897.t1 catgtaagaattcacagaggtgagagaccgtttaaatgtgatatttgtgattttgcttttgcggatgctcgaaatctgcg cacgcaccaaaaaatccacaacaaggagaaggaccagcagtgtgagctatgtggtgccaggtttttatgggccagttgtc tagcacgacatgttcagatcgtgcatgaaaaagtcaaatcatttgcctgcagtatctgcgggaaaaagtttggtcagaaa ggtgcgatgaaaattcacgagactactcatagcactgagagaccgtttaaatgtgaggagtgtgggaaagacttcacatg taaaacagccctgaagtctcaccagagagttcatagtgtgatcaaaaggtttgtgtgccagtactgtgataagggcttta accggggattccagcttaaacgacatctattacgatgtggaaaatcaaatgacaatttgagtactttggtagaattttca caagatatcgactccaaagaggatgatatggaagagaatatggtccatttggaaggacttgattccagtgtgctagattt gagcacatctactgataccgtcatgcagtttgagcagtttacagaaaatgtaggtgtt |
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Protein
| Protein ID | pfu_aug1.0_254113.1_64897.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_254113.1_64897.t1 HVRIHRGERPFKCDICDFAFADARNLRTHQKIHNKEKDQQCELCGARFLWASCLARHVQIVHEKVKSFACSICGKKFGQK GAMKIHETTHSTERPFKCEECGKDFTCKTALKSHQRVHSVIKRFVCQYCDKGFNRGFQLKRHLLRCGKSNDNLSTLVEFS QDIDSKEDDMEENMVHLEGLDSSVLDLSTSTDTVMQFEQFTENVGV |
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