Gene
| Gene Model ID | pfu_aug1.0_25542.1_62376 |
|---|---|
| Locus | scaffold25542.1 : 1 ... 2391 : + |
| To GenomeBrowser | scaffold25542.1:1..2391 |
| Genes list of scaffold | scaffold25542.1 |
| Synonym | pfu_aug2.0_85.1_16885 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_25542.1_62376.t1 | 2 | 1 | SH3_2 | 9 | 60 | 3.9e-12 | 45.4 | 1.2e-15 | 6.1e-12 | 44.8 |
| pfu_aug1.0_25542.1_62376.t1 | 2 | 1 | SH3_1 | 10 | 55 | 2.0e-15 | 55.9 | 2.3e-17 | 1.1e-13 | 50.2 |
| pfu_aug1.0_25542.1_62376.t1 | 2 | 1 | SH3_9 | 11 | 59 | 1.3e-15 | 56.6 | 2.2e-18 | 1.1e-14 | 53.7 |
| pfu_aug1.0_25542.1_62376.t1 | 2 | 2 | SH3_1 | 72 | 84 | 2.0e-15 | 55.9 | 0.0038 | 19.0 | 4.7 |
| pfu_aug1.0_25542.1_62376.t1 | 2 | 2 | SH3_9 | 73 | 84 | 1.3e-15 | 56.6 | 0.059 | 290.0 | 1.1 |
| pfu_aug1.0_25542.1_62376.t1 | 2 | 2 | SH3_2 | 77 | 93 | 3.9e-12 | 45.4 | 0.5 | 2500.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_25542.1_62376.t1 | gi|327278037|ref|XP_003223769.1| | 3.0e-32 |
Transcript
| Transcript ID | pfu_aug1.0_25542.1_62376.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25542.1_62376.t1 ggtttggtgggaaatcaaccctgtgcaaaggctttattcaattatgaaggaaaagatagtggggatttgtcattcaagaa aggagacatcataattttgaaaagacaagtagacgagaattggttccatggagagtttaatggtcaacatggattcttcc ctgcaacttatgtacaggagttagtccctttgcctgtgacaacacctcagtgcaaagctctgtatgattttgactttgaa aatgaaaacgagaagaaagactgcctatgttttaaaaag |
|
Protein
| Protein ID | pfu_aug1.0_25542.1_62376.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_25542.1_62376.t1 GLVGNQPCAKALFNYEGKDSGDLSFKKGDIIILKRQVDENWFHGEFNGQHGFFPATYVQELVPLPVTTPQCKALYDFDFE NENEKKDCLCFKK |
|