Gene
| Gene Model ID | pfu_aug1.0_256221.1_35913 |
|---|---|
| Locus | scaffold256221.1 : 1 ... 614 : + |
| To GenomeBrowser | scaffold256221.1:1..614 |
| Genes list of scaffold | scaffold256221.1 |
| Synonym | pfu_aug2.0_480.1_00803 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_256221.1_35913.t1 | 4 | 1 | zf-H2C2_2 | 102 | 116 | 3.2e-13 | 49.2 | 0.00019 | 0.19 | 12.1 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 1 | zf-C2H2 | 106 | 128 | 7.4e-09 | 35.4 | 1.9e-06 | 0.0018 | 18.4 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 1 | zf-C2H2_4 | 107 | 128 | 1.4e-07 | 31.3 | 0.00048 | 0.48 | 10.8 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 2 | zf-H2C2_2 | 121 | 141 | 3.2e-13 | 49.2 | 0.00031 | 0.31 | 11.4 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 2 | zf-C2H2 | 135 | 157 | 7.4e-09 | 35.4 | 1.0e-05 | 0.01 | 16.1 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 2 | zf-C2H2_4 | 135 | 157 | 1.4e-07 | 31.3 | 3.0e-05 | 0.03 | 14.6 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 3 | zf-H2C2_2 | 150 | 178 | 3.2e-13 | 49.2 | 7.0e-07 | 0.00069 | 19.7 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 3 | zf-C2H2 | 167 | 189 | 7.4e-09 | 35.4 | 0.00019 | 0.19 | 12.1 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 3 | zf-C2H2_4 | 167 | 189 | 1.4e-07 | 31.3 | 3.4e-05 | 0.034 | 14.4 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 4 | zf-H2C2_2 | 184 | 204 | 3.2e-13 | 49.2 | 4.4e-05 | 0.044 | 14.1 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 4 | zf-C2H2 | 195 | 204 | 7.4e-09 | 35.4 | 0.31 | 310.0 | 2.0 |
| pfu_aug1.0_256221.1_35913.t1 | 4 | 4 | zf-C2H2_4 | 195 | 204 | 1.4e-07 | 31.3 | 0.076 | 75.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_256221.1_35913.t1 | gi|345491000|ref|XP_001602165.2| | 2.0e-14 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_256221.1_35913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_256221.1_35913.t1 ggtgaagatgtaggggaggatccagagatttcagagggggaatcaggtggacaagaagaggtggatccaaaaatatgtga tgaaggaaaggacaccacggaccattctgtattaggagaaaataatgaggtgattgagtgtagtttacaaaaattagaga aagcaatgacttctgatgaaggtgacatatcagagaaagctcaagtttgcaagaaaaatagtcagatattgcaaccagag ccttataccgatatgtccgacggtgatggtacttgtacaggaaaggatgccaacttaaacgatcagaagaatcccttcat gtgccatgtatgtggtaaaagtttttctaagaaaagatatctaaattgccacgtaaagcgacacgaggaatccagtaaga agttcaagtgtcaaatttgtggttgggggttctttgaaagacacaaacttcgaattcatctagagacgcataaaccgagc gatcagcagtcgctaccgtataaatgtactttatgtgataaacagttccataacaaagcgggttggagcgaccatatgga tggtcacgatggaaaacgaacatggaaatgcgagtattgcgaagcagcgttcac |
|
Protein
| Protein ID | pfu_aug1.0_256221.1_35913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_256221.1_35913.t1 GEDVGEDPEISEGESGGQEEVDPKICDEGKDTTDHSVLGENNEVIECSLQKLEKAMTSDEGDISEKAQVCKKNSQILQPE PYTDMSDGDGTCTGKDANLNDQKNPFMCHVCGKSFSKKRYLNCHVKRHEESSKKFKCQICGWGFFERHKLRIHLETHKPS DQQSLPYKCTLCDKQFHNKAGWSDHMDGHDGKRTWKCEYCEAAF |
|