Gene
| Gene Model ID | pfu_aug1.0_2568.1_37325 |
|---|---|
| Locus | scaffold2568.1 : 17096 ... 40125 : + |
| To GenomeBrowser | scaffold2568.1:17096..40125 |
| Genes list of scaffold | scaffold2568.1 |
| Synonym | pfu_aug2.0_130.1_00290 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2568.1_37325.t1 | 1 | 1 | Pep_M12B_propep | 48 | 147 | 1.7e-14 | 53.6 | 7.1e-18 | 3.5e-14 | 52.7 |
| pfu_aug1.0_2568.1_37325.t1 | 4 | 1 | TSP_1 | 481 | 508 | 6.3e-09 | 35.8 | 3.6e-05 | 0.18 | 11.9 |
| pfu_aug1.0_2568.1_37325.t1 | 4 | 2 | TSP_1 | 542 | 595 | 6.3e-09 | 35.8 | 1.5e-07 | 0.00075 | 19.5 |
| pfu_aug1.0_2568.1_37325.t1 | 4 | 3 | TSP_1 | 605 | 646 | 6.3e-09 | 35.8 | 5.0e-06 | 0.025 | 14.7 |
| pfu_aug1.0_2568.1_37325.t1 | 4 | 4 | TSP_1 | 672 | 683 | 6.3e-09 | 35.8 | 0.00018 | 0.89 | 9.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2568.1_37325.t1 | gi|296196359|ref|XP_002745787.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 3 isoform X4 [Callithrix jacchus] | 8.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2568.1_37325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2568.1_37325.t1 atgagggtgttatacgatgaatcaaaatcaacaatacgatgtctgaacgagcaagtgaagatctttgtcccttttatctc aaacgaaaacggagagttcctagatgacatttctatgaaacaagtcaacattgatgatgatactgagattgaggttgagt atccagactctgtctatgtgactattccagtagagggatatgggatcattttgaagctttggaagcgtttgatccatacc agtaaacgggagaaggtctttgagaaggacaatacgacgtacatggagatatacgatgatgattgttattatcagggata tgtgacagacgataggactaccttcgctgcagtttcactctgtaacggtttgagaggatacatgcaaacagacaagtatc agatatctgtgcacccaaaggaagcttctgttaccggaaataacaacgcttatcattttgccagattgtgtgaaaagcag tcaggttcgcaccctcgagattcaatacaaattgataggaagaagcgtcaagccaacaaaaagttcctagaagttttact tgcagcagatactagcgttgtcaaatttgttggaaaagacgtaatagaaaattaccttctgtcgctgatgaacatacatc atatcccacccatatcccagccatcctgctacgtctttcgatttggactatttcacaatggtcatggtaaccgatgttcc ggtcaaagataccagaccagtgttatggcccctactgtccaagccaatctacaacagtactggtggacggaatgcagtaa taatcgaatgatggaggtcctaccgacactaacatgtttggataacgacccttcaaaaagtctggacccatctcaagatc caataggacaaatgttctcagcaagccaacagtgtagatacgagttcggagagacccacgaattatgtagaaatttcaac ggcaacttttgtccgatgttatggtgcgcagataggagaagaccacatctgtgtaaaacgaaaaggggaccaccactaaa tggcaccaaatgtggcactgaaaggcaagtcggttgtgacggtgtccgtaattccacagtaagagaggatcgatgtgggg tttgtgacggagacgactctacctgtaaagaagtatcggggatgttcaagaaaaaacttccctatacaggaaggggacgt gagtacgcggaggtcatcgtattaccaaaaggagctcgacacattgccatcaaggagactgcaacttctccacatttcct cggatcccaacagttgatatattattgctatgacaaggcgactggtgaaaaagtggataatgatacgaaatgtctgtttt tggagaaacctgaaactaaccctgtaaaatgtgaaaggataaattgcaatgccgaaacgttccaatgggcccttttagtt tcttggagcgattgcagctcagcgtgcggaaatgacggctatcaataccaagaatatagatgtgaacgggatgtcggaaa tgggaactacgaggccgtgtccttcgacttgtgcaattttgttcccgcgccaaattacacgcggccttgtaatagaatcc cgtgctctgatgtgaaatggattccaactgatgaatggagtgcgtgttcggaaagttgcggaacgaatggactaaaaaca aagatttacgaatgcgtcgattctcaatcaaatcatctgagtgaagagaattgcaaagatctgtttaaacccgaggcaac ggaaaagtgcaataggaaagcgtgtataaaggagtggtatagactagaatctacgaaccaatggggagagtgttcggcca gttgcgggtgggaagggttagcaattagagtttatgaatgcaagaaaataaattcaaacgacgaagtcgaagttgttgac gtagaaaattgcgaatcttacgaaggcgacaaggaaatgagaccgtgtaataggaaggcatgcagtaatgggtactatga ctggattcagctgtctgattggtcggaatgttcatctttatgtggtgagacaggaaggcatgtcctgcttcatatgtctg gaaatattctgactggagtacatgttccgtttcctgtggaatgggtatccagtcccgtcaggtttactgcagtgatacct ctagaactgttagtaactcattatgctccagatccgcacctgtaa |
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Protein
| Protein ID | pfu_aug1.0_2568.1_37325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2568.1_37325.t1 MRVLYDESKSTIRCLNEQVKIFVPFISNENGEFLDDISMKQVNIDDDTEIEVEYPDSVYVTIPVEGYGIILKLWKRLIHT SKREKVFEKDNTTYMEIYDDDCYYQGYVTDDRTTFAAVSLCNGLRGYMQTDKYQISVHPKEASVTGNNNAYHFARLCEKQ SGSHPRDSIQIDRKKRQANKKFLEVLLAADTSVVKFVGKDVIENYLLSLMNIHHIPPISQPSCYVFRFGLFHNGHGNRCS GQRYQTSVMAPTVQANLQQYWWTECSNNRMMEVLPTLTCLDNDPSKSLDPSQDPIGQMFSASQQCRYEFGETHELCRNFN GNFCPMLWCADRRRPHLCKTKRGPPLNGTKCGTERQVGCDGVRNSTVREDRCGVCDGDDSTCKEVSGMFKKKLPYTGRGR EYAEVIVLPKGARHIAIKETATSPHFLGSQQLIYYCYDKATGEKVDNDTKCLFLEKPETNPVKCERINCNAETFQWALLV SWSDCSSACGNDGYQYQEYRCERDVGNGNYEAVSFDLCNFVPAPNYTRPCNRIPCSDVKWIPTDEWSACSESCGTNGLKT KIYECVDSQSNHLSEENCKDLFKPEATEKCNRKACIKEWYRLESTNQWGECSASCGWEGLAIRVYECKKINSNDEVEVVD VENCESYEGDKEMRPCNRKACSNGYYDWIQLSDWSECSSLCGETGRHVLLHMSGNILTGVHVPFPVEWVSSPVRFTAVIP LELLVTHYAPDPHL |
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