Gene
| Gene Model ID | pfu_aug1.0_257.1_50753 |
|---|---|
| Locus | scaffold257.1 : 93345 ... 107325 : - |
| To GenomeBrowser | scaffold257.1:93345..107325 |
| Genes list of scaffold | scaffold257.1 |
| Synonym | pfu_aug2.0_221.1_03832 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | BMP type1 receptor |
| Description | NCBI blastp hit to |CAE11917.1| BMP type 1b receptor [Crassostrea gigas]. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_257.1_50753.t1 | 1 | 1 | TGF_beta_GS | 142 | 167 | 5.0e-13 | 48.1 | 9.0e-16 | 9.5e-13 | 47.2 |
| pfu_aug1.0_257.1_50753.t1 | 1 | 1 | Pkinase | 171 | 297 | 5.8e-14 | 51.8 | 8.4e-17 | 8.9e-14 | 51.2 |
| pfu_aug1.0_257.1_50753.t1 | 1 | 1 | Pkinase_Tyr | 181 | 297 | 1.5e-09 | 37.3 | 3.4e-12 | 3.6e-09 | 36.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_257.1_50753.t1 | gi|33352160|emb|CAE11917.1| | BMP type 1b receptor [Crassostrea gigas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_257.1_50753.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_257.1_50753.t1 atgtttacttttgtacttcaagttgaagttcaactacaccagttagattattgtttcgccttttatggtcagaaaatgga ccgattgcacctcaaaccatcattgtttgttgaagatgaatttctcttaattttacacaccgatattgttgaagcagtac tgtccgtgcaggtcacttctgaaattggaaaattaaagcaaaacttcaattcattgaagattacatactctccaaacaaa gaggagaaaggcagcagtccagatgtagatttaacaaatttagcactgattgtatctgtgtcagtcagtgttatggtcct catcatagtaatcactgtcttatgtctcaaatatagaaagaaaaataagaaagaatccttcctacgtgaggagccggatc agagtgattcgtttatctctgattctctgagaggtcttattgagcagtcctcgggatgtggatcaggcatgccattcctg gttcaaagaacaattgccagaaatatttccttagaaaggagtataggaaaaggacgatatggaacaaagagatatatggc accagaagttttagatgaaactttaaataaaagtcattttgaagcctaccgacaagcagatatttattcctttggcctcg tgctgtgggaaattactagaagatgcatttcaaatggtgtagtagaggaacaccaacttccatatcaggacatggtgcca agtgatcccagttttgaagaaatgaggaaaatagtttgtgttgagaaattgcgacctgatttccccatcagatggttcag taatgaatacttgaaaaccatgtccaaactgatgggcgagtgttggagccataatccacaggctcgacttacagcattac gagtgaaaaagacacttggtaggatgattcaagtgcttaataaacaaacaaagctagaagaaccagataaaatctcagag cagttattaacagaagtcataaaacccggagaaagctag |
|
Protein
| Protein ID | pfu_aug1.0_257.1_50753.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_257.1_50753.t1 MFTFVLQVEVQLHQLDYCFAFYGQKMDRLHLKPSLFVEDEFLLILHTDIVEAVLSVQVTSEIGKLKQNFNSLKITYSPNK EEKGSSPDVDLTNLALIVSVSVSVMVLIIVITVLCLKYRKKNKKESFLREEPDQSDSFISDSLRGLIEQSSGCGSGMPFL VQRTIARNISLERSIGKGRYGTKRYMAPEVLDETLNKSHFEAYRQADIYSFGLVLWEITRRCISNGVVEEHQLPYQDMVP SDPSFEEMRKIVCVEKLRPDFPIRWFSNEYLKTMSKLMGECWSHNPQARLTALRVKKTLGRMIQVLNKQTKLEEPDKISE QLLTEVIKPGES |
|