Gene
| Gene Model ID | pfu_aug1.0_2580.1_58961 |
|---|---|
| Locus | scaffold2580.1 : 42936 ... 57642 : + |
| To GenomeBrowser | scaffold2580.1:42936..57642 |
| Genes list of scaffold | scaffold2580.1 |
| Synonym | pfu_aug2.0_10848.1_29712 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2580.1_58961.t1 | 1 | 1 | RYDR_ITPR | 1 | 84 | 1.7e-14 | 53.5 | 6.7e-18 | 3.3e-14 | 52.6 |
| pfu_aug1.0_2580.1_58961.t1 | 2 | 1 | SPRY | 84 | 126 | 8.2e-28 | 96.9 | 1.0e-06 | 0.0052 | 16.8 |
| pfu_aug1.0_2580.1_58961.t1 | 2 | 1 | RyR | 179 | 269 | 5.6e-40 | 135.2 | 2.7e-32 | 1.3e-28 | 98.8 |
| pfu_aug1.0_2580.1_58961.t1 | 2 | 2 | RyR | 293 | 339 | 5.6e-40 | 135.2 | 3.3e-12 | 1.6e-08 | 34.4 |
| pfu_aug1.0_2580.1_58961.t1 | 2 | 2 | SPRY | 375 | 497 | 8.2e-28 | 96.9 | 6.7e-26 | 3.3e-22 | 78.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2580.1_58961.t1 | gi|328717378|ref|XP_003246190.1| | PREDICTED: ryanodine receptor 44F [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2580.1_58961.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2580.1_58961.t1 atgatagccctcatcttggagaccatcgacaaatttagccagtacaaaagtagacgacactttgctcactatgctgggga ggagtcggctaacagttacgatgacatcgccagctatctatacttactactcgcggccatgatccagggtaaccgtgcta attgtgcccagtttgctcaatcatacagacttgactggctagttaacaggctggaaagtcaacaatcatctaaaggtggt aagcctaagcagatcatcttcactgtaaatggagtacaggcacgtggcttcttcaaggactttaacacaagtggtctctt cttcccggtggtgtccatgtcagccagagtagggtgccgttttatccttggaggtgatcacggtaaacttaaatatggtc cgcctgacggacactcccctgttgcagagtcattgatgccagatgagaagctccggatagaaccgtgcttctacttcggt gctccgaataaaaacgttctcagcggacccacggaaatgaccttctataccccatttgtgccaaatcctgtagatacatc acatattcagcttcctgtgtatatagagaaagttcgagacagacttgccgaaaacttacatgagatatgggccatgcaga aaatagagcagggatggtcatatggagaggcgagagatgatcatttgaagaaaaatccatctcttacaaactttgaaaaa gtgccaaaatctgagaagaaatatgttgtgactgttgcctttgaaactttgaggaccttacttgctattggctatcacat atcagtagatgctcagaaacaatccaacaacagactcaagacaatcaaattaccaaacaatacttactcttgtctctatc aggaccaagtcaataaaagaagtccattcttggtgccttacaacaaagtggatgagaaaatcaaaagagcaaacagggaa acatctaaccagactgtgaggacgttactagcgtatggttataacctggaacctccaaccagtgatatgggtgatagcag ttttacagcgatggcaaagaacttggcagaaagaagaagtgccaccagaacatacagggcagaactcacgtatacagtca caagtggaaaatggtattatgagtttgaggcagtaacatgcggctacatgaaagtgggctgggccaaagtgtcatgtgac ccttgtactgagctgggattggatggattgtcatacacatttgatggcttgattggcagaaagtggaaccaaggagctga gcagtatggtaagaactggagacctggtgatgtcataggatgtatgctggatctgacagataggaccatcacgttttccc tgaatggagaattgatgatggattctctcggccaagagatagctttccgtggtattgacactgacgagggctatgtgccg gccttcaccctcagtagctatgaacagggcaaggttaactttggtcaagatgtcaacacactgaagtactttacagtctg tggtctacaggagggatatgaacctttctataaatacgatcacggtaaatctcccggatcagcggaagctagtacgccct ctagtagcgtcccgggggaggtaactcctgtcatgaatggtcatgctgagggctcgtcccatggtgatgatgtattgaaa aaatcttatgcaaagaagggtggtaaaaaagctcatgaggaggatgaggattatacaccaaacggaatgatgaacggtga cgagccagatctctcactcaggaaaggactacattatcaaagaggctatgccgatgatgaaaatgcaagcctgaatgaga ggagaagacgatacaagaaatcagagaggggaaactcactagacgagtcagcttctgatggaaactcacagacgggactc aaatctgcagccagcgagtcacagctcaatcaagcagataaaattggaatgttagcagtctacatacctgaggaggacag gagcttggacattctggaactaacagaggataaaccacttctagagtaa |
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Protein
| Protein ID | pfu_aug1.0_2580.1_58961.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2580.1_58961.t1 MIALILETIDKFSQYKSRRHFAHYAGEESANSYDDIASYLYLLLAAMIQGNRANCAQFAQSYRLDWLVNRLESQQSSKGG KPKQIIFTVNGVQARGFFKDFNTSGLFFPVVSMSARVGCRFILGGDHGKLKYGPPDGHSPVAESLMPDEKLRIEPCFYFG APNKNVLSGPTEMTFYTPFVPNPVDTSHIQLPVYIEKVRDRLAENLHEIWAMQKIEQGWSYGEARDDHLKKNPSLTNFEK VPKSEKKYVVTVAFETLRTLLAIGYHISVDAQKQSNNRLKTIKLPNNTYSCLYQDQVNKRSPFLVPYNKVDEKIKRANRE TSNQTVRTLLAYGYNLEPPTSDMGDSSFTAMAKNLAERRSATRTYRAELTYTVTSGKWYYEFEAVTCGYMKVGWAKVSCD PCTELGLDGLSYTFDGLIGRKWNQGAEQYGKNWRPGDVIGCMLDLTDRTITFSLNGELMMDSLGQEIAFRGIDTDEGYVP AFTLSSYEQGKVNFGQDVNTLKYFTVCGLQEGYEPFYKYDHGKSPGSAEASTPSSSVPGEVTPVMNGHAEGSSHGDDVLK KSYAKKGGKKAHEEDEDYTPNGMMNGDEPDLSLRKGLHYQRGYADDENASLNERRRRYKKSERGNSLDESASDGNSQTGL KSAASESQLNQADKIGMLAVYIPEEDRSLDILELTEDKPLLE |
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