Gene
| Gene Model ID | pfu_aug1.0_2596.1_66390 |
|---|---|
| Locus | scaffold2596.1 : 49652 ... 58875 : - |
| To GenomeBrowser | scaffold2596.1:49652..58875 |
| Genes list of scaffold | scaffold2596.1 |
| Synonym | pfu_aug2.0_529.1_30868 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2596.1_66390.t1 | 1 | 1 | Ribosomal_L11_N | 12 | 69 | 2.9e-15 | 55.4 | 8.8e-19 | 4.3e-15 | 54.8 |
| pfu_aug1.0_2596.1_66390.t1 | 1 | 1 | Ribosomal_L11 | 74 | 134 | 3.2e-07 | 30.3 | 1.2e-10 | 5.7e-07 | 29.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2596.1_66390.t1 | gi|22758902|gb|AAN05610.1| | ribosomal protein L12 [Argopecten irradians] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 8 |
| egg-4cell | 2 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 4 |
| maleGonad | 1 |
| mantle | 6 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2596.1_66390.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2596.1_66390.t1 atgcctcctaaattcgatcctacagccataactatcgtttacgtgaagtcagtcggaggagaagtgccagctacctcttc attggccccaaagatcggtccacttggtctgtcaccaaagaaagtaggagatgatatctcaaaagccacagtagactgga agggactaaaaataacatgtaaattggtggtacagaatcgtcaggccaaggtagaagttgtaccaagtgcctcatcactg gttattaaggctctaaaggaacctcccagggacagaaagaaggtcaagcatgtgaaacacactggaaacattagcttcga cgagatcctcaacattgcaagacagatgagaccaagaagtatggcaagaaaattagaaggaacagtcaaagaaatattag agattgcttatgacaagaggaagatccctattttcaagatcaagttcacattggaaatggtcagaatcttttatattcag cctagaggctgctgttttgattggatcttgaccaaacttcatacagtgattgcttatgacgagacttgtaggaggaaacc tattgactttcaaggtcaaatgtcaatatcagagattggaaatggtcaacatccttgtatacagcctagagggtgcagtt ttgattggatcttcatcaaacttcatacaccaattgcttatgagaagaataagaaccctattgattttcaaggtcaaagg tcacagattggaaatggtcaaaatctttgtatacagtcttga |
|
Protein
| Protein ID | pfu_aug1.0_2596.1_66390.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2596.1_66390.t1 MPPKFDPTAITIVYVKSVGGEVPATSSLAPKIGPLGLSPKKVGDDISKATVDWKGLKITCKLVVQNRQAKVEVVPSASSL VIKALKEPPRDRKKVKHVKHTGNISFDEILNIARQMRPRSMARKLEGTVKEILEIAYDKRKIPIFKIKFTLEMVRIFYIQ PRGCCFDWILTKLHTVIAYDETCRRKPIDFQGQMSISEIGNGQHPCIQPRGCSFDWIFIKLHTPIAYEKNKNPIDFQGQR SQIGNGQNLCIQS |
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