Gene
| Gene Model ID | pfu_aug1.0_2596.1_66391 |
|---|---|
| Locus | scaffold2596.1 : 59438 ... 62369 : - |
| To GenomeBrowser | scaffold2596.1:59438..62369 |
| Genes list of scaffold | scaffold2596.1 |
| Synonym | pfu_aug2.0_529.1_30869 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2596.1_66391.t1 | 1 | 1 | Glyco_transf_54 | 70 | 314 | 0.0 | 246.4 | 0.0 | 0.0 | 245.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2596.1_66391.t1 | gi|260805086|ref|XP_002597418.1| | hypothetical protein BRAFLDRAFT_80585 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2596.1_66391.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2596.1_66391.t1 atcgatgacggtaactcaatacgtggcttgtggcagggacaactgtttgattatcctgatattttatttgcttctaatga aacggaggaaaatgttacagaagagttaccatggttacaaatgggaaaacccactcatgaaagtattgtcgttccacctt tattagttgacggtgttgaaaaatatgtaggatacgccaagaatcagtccttgaagtatgggaatcatgtaactgaccga gtgtacctttccatagggattccgactgtgagcagagcctggggaaatgaaaattatttattcaaaactttagaatcatt gattgcgaattcatcaccggaggatctaacgaggatggtttttgtcgtcttcatggctgattttaataacacttggaatg aagtatctgccaaaaacctcagaaaaagatatttcgatctatgtgagaacggaacaatacaaatcgttacggttccctgt ggtatatatccagacttttctcagctgaacggaacacttggtgataccaaggaaagaacaatatggcgatcaaaacaaaa cattgactttgcattcatgatgctctatagtagaaaattgtcttattattatatgcaactagaagatgacgtcataagtg ctaacaattatttgcgagggattcggaaatttatagatttacaaaagaacaaattttgggcttgtctggaagtatcaaaa ttaggcttcattggcaaaatattcaagacaagtcatttaccaaagttttcgtcattctttttagccttttatgaaacttt tccgtgtgatgtcttacttggacgagtgtattctcttctaggtcaaaagaaacctttgcattccccagaaagtctgtttc aacatattggaaaagtatcctcattaaaacacaaaatcatgccatccattgatcaaaatttcaaattcataggccaatca aaattggctgtagcggaagttccaaaaggggacaatcctcccgcaatcattcgaacaaatatgaaagccatggagaacaa tcgacttccggaacatgcgtactcgaactcgtcgtcgtattttaaagttaggacaccaagaaaggattcgttttatacta tattattccggaaaccacaaagggttcaaaggattgttgtttcaacaggagatgataccacaaaaaaggacatcttgaat tacggagacgtatacattggtgaatttcaaactcgaacgccagcgtgtaagaacacaaggaaagctggtccttttgttga tggattctttgattcatttttgcaaggatttaaactgccaaaatttcttatttgtattaccataagaccaaggcggactc aatcttcaccttgtatattccgtgaaatatctgttgtgttgaaaaaatga |
|
Protein
| Protein ID | pfu_aug1.0_2596.1_66391.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2596.1_66391.t1 IDDGNSIRGLWQGQLFDYPDILFASNETEENVTEELPWLQMGKPTHESIVVPPLLVDGVEKYVGYAKNQSLKYGNHVTDR VYLSIGIPTVSRAWGNENYLFKTLESLIANSSPEDLTRMVFVVFMADFNNTWNEVSAKNLRKRYFDLCENGTIQIVTVPC GIYPDFSQLNGTLGDTKERTIWRSKQNIDFAFMMLYSRKLSYYYMQLEDDVISANNYLRGIRKFIDLQKNKFWACLEVSK LGFIGKIFKTSHLPKFSSFFLAFYETFPCDVLLGRVYSLLGQKKPLHSPESLFQHIGKVSSLKHKIMPSIDQNFKFIGQS KLAVAEVPKGDNPPAIIRTNMKAMENNRLPEHAYSNSSSYFKVRTPRKDSFYTILFRKPQRVQRIVVSTGDDTTKKDILN YGDVYIGEFQTRTPACKNTRKAGPFVDGFFDSFLQGFKLPKFLICITIRPRRTQSSPCIFREISVVLKK |
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