Gene
| Gene Model ID | pfu_aug1.0_26013.1_62399 |
|---|---|
| Locus | scaffold26013.1 : 1 ... 7998 : - |
| To GenomeBrowser | scaffold26013.1:1..7998 |
| Genes list of scaffold | scaffold26013.1 |
| Synonym | pfu_aug2.0_171.1_03753 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_26013.1_62399.t1 | 1 | 1 | adh_short_C2 | 2 | 126 | 2.9e-15 | 56.7 | 4.4e-19 | 3.2e-15 | 56.5 |
| pfu_aug1.0_26013.1_62399.t1 | 1 | 1 | adh_short | 2 | 107 | 4.2e-13 | 49.5 | 6.4e-17 | 4.7e-13 | 49.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_26013.1_62399.t1 | gi|260824515|ref|XP_002607213.1| | hypothetical protein BRAFLDRAFT_118627 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_26013.1_62399.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26013.1_62399.t1 ccagagtctgttataaatgctgtagaggaagccttgaaaaatttcagacgaattgacattcttgtgaatggtgctgctgg taatttcctgtgtccagcatccagtatgtcattcaatgcattcaggacagtgatggagatagatgcacatggcacgttca acgtcagtaaggtcgtatatgacaagtacatgaaggatcatggtggcgtcatagtcaacattacagcactccttcatgta agaggacgtattctacaggcacatgctggctctgctaaagctgccatagaagcaatgacaagacatttagctgttgagtg gggtttgaatggaatacgagtgatgtgtgtagctccaggtccaataggtgatacagagggaatgagtcgacttg |
|
Protein
| Protein ID | pfu_aug1.0_26013.1_62399.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26013.1_62399.t1 PESVINAVEEALKNFRRIDILVNGAAGNFLCPASSMSFNAFRTVMEIDAHGTFNVSKVVYDKYMKDHGGVIVNITALLHV RGRILQAHAGSAKAAIEAMTRHLAVEWGLNGIRVMCVAPGPIGDTEGMSRL |
|