Gene
| Gene Model ID | pfu_aug1.0_2607.1_30179 |
|---|---|
| Locus | scaffold2607.1 : 104566 ... 122645 : - |
| To GenomeBrowser | scaffold2607.1:104566..122645 |
| Genes list of scaffold | scaffold2607.1 |
| Synonym | pfu_aug2.0_484.1_14204 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2607.1_30179.t1 | 3 | 1 | LRR_4 | 13 | 52 | 2.0e-15 | 55.9 | 3.4e-12 | 1.0e-08 | 34.6 |
| pfu_aug1.0_2607.1_30179.t1 | 2 | 1 | LRR_8 | 13 | 48 | 2.1e-10 | 40.2 | 5.9e-08 | 0.00018 | 21.2 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 1 | LRR_7 | 13 | 29 | 2.7e-06 | 26.6 | 0.0013 | 3.8 | 8.1 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 1 | LRR_1 | 14 | 35 | 2.3e-09 | 35.9 | 2.7e-05 | 0.08 | 13.0 |
| pfu_aug1.0_2607.1_30179.t1 | 2 | 2 | LRR_8 | 37 | 77 | 2.1e-10 | 40.2 | 1.2e-10 | 3.4e-07 | 29.8 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 2 | LRR_7 | 37 | 52 | 2.7e-06 | 26.6 | 0.0018 | 5.3 | 7.7 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 2 | LRR_4 | 38 | 76 | 2.0e-15 | 55.9 | 1.0e-11 | 3.0e-08 | 33.0 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 2 | LRR_1 | 38 | 57 | 2.3e-09 | 35.9 | 1.6e-05 | 0.046 | 13.7 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 3 | LRR_1 | 60 | 77 | 2.3e-09 | 35.9 | 7.0e-05 | 0.21 | 11.7 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 3 | LRR_7 | 60 | 75 | 2.7e-06 | 26.6 | 1.3e-05 | 0.039 | 14.1 |
| pfu_aug1.0_2607.1_30179.t1 | 3 | 3 | LRR_4 | 127 | 139 | 2.0e-15 | 55.9 | 0.98 | 2900.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2607.1_30179.t1 | gi|260831320|ref|XP_002610607.1| | hypothetical protein BRAFLDRAFT_65797 [Branchiostoma floridae] | 6.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_2607.1_30179.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2607.1_30179.t1 atggaccaatgtcctcgtcgtattggttttatgggaccacagcttacacttctaaatttagctcagaacaatctcagtga tttacccccagaaataggctgccttagaggcctgcaagaacttcatctacagaaaaatcaactctctaccattcctgata gtataggaactctagtcaacctaaaggtgcttactgtgtcccataactctctacaaacattaccagctcacctcgacgaa gttgagatgagcttatgctataaccccggcgtccgcgtccgcgtccccgtccgcgtctgcgtccgcgtccagttaaagtt tttgggcaactcagtatctgacaaattttgctttgggtgctttaaccgagtgttaatggagatccctccttttttaaaag aacagataaatttgcagtatggaccagacatgtacgtttcgggtacttag |
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Protein
| Protein ID | pfu_aug1.0_2607.1_30179.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2607.1_30179.t1 MDQCPRRIGFMGPQLTLLNLAQNNLSDLPPEIGCLRGLQELHLQKNQLSTIPDSIGTLVNLKVLTVSHNSLQTLPAHLDE VEMSLCYNPGVRVRVPVRVCVRVQLKFLGNSVSDKFCFGCFNRVLMEIPPFLKEQINLQYGPDMYVSGT |
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