Gene
| Gene Model ID | pfu_aug1.0_26161.1_11755 |
|---|---|
| Locus | scaffold26161.1 : 6445 ... 7365 : - |
| To GenomeBrowser | scaffold26161.1:6445..7365 |
| Genes list of scaffold | scaffold26161.1 |
| Synonym | pfu_aug2.0_110.1_00262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_26161.1_11755.t1 | 1 | 1 | SPARC_Ca_bdg | 9 | 77 | 8.4e-07 | 29.0 | 8.6e-10 | 9.1e-07 | 28.9 |
| pfu_aug1.0_26161.1_11755.t1 | 1 | 1 | EF-hand_4 | 17 | 79 | 3.7e-07 | 29.8 | 4.2e-10 | 4.4e-07 | 29.5 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 1 | EF-hand_1 | 18 | 45 | 2.3e-19 | 67.1 | 1.1e-11 | 1.2e-08 | 33.6 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 1 | EF-hand_6 | 18 | 45 | 7.5e-16 | 56.5 | 3.8e-11 | 4.0e-08 | 32.4 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 1 | EF-hand_8 | 18 | 44 | 2.4e-15 | 55.8 | 6.7e-07 | 0.0007 | 19.1 |
| pfu_aug1.0_26161.1_11755.t1 | 1 | 1 | EF-hand_7 | 19 | 79 | 3.1e-18 | 65.6 | 4.3e-21 | 4.5e-18 | 65.1 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 1 | EF-hand_5 | 19 | 42 | 1.7e-17 | 61.8 | 3.0e-10 | 3.2e-07 | 29.3 |
| pfu_aug1.0_26161.1_11755.t1 | 1 | 1 | EF-hand_10 | 35 | 76 | 7.6e-06 | 25.4 | 1.1e-08 | 1.1e-05 | 24.9 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 2 | EF-hand_8 | 44 | 81 | 2.4e-15 | 55.8 | 1.8e-13 | 1.9e-10 | 40.1 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 2 | EF-hand_1 | 55 | 79 | 2.3e-19 | 67.1 | 1.1e-12 | 1.1e-09 | 36.8 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 2 | EF-hand_5 | 56 | 79 | 1.7e-17 | 61.8 | 9.4e-11 | 1.0e-07 | 30.9 |
| pfu_aug1.0_26161.1_11755.t1 | 2 | 2 | EF-hand_6 | 56 | 79 | 7.5e-16 | 56.5 | 1.6e-08 | 1.6e-05 | 24.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_26161.1_11755.t1 | gi|27371207|gb|AAH41530.1| | MGC53213 protein [Xenopus laevis] | 9.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_26161.1_11755.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26161.1_11755.t1 atggaacagttcaagacgctagttcacaagatgtcaacagacaaaacaactgagctacgagaaacctttgaaatgtttga caaaaatcatgatggctatatcactcgaaaagaatactctcaggttttacgcaaaataggccaagatgtcgacgatgaga cggtggaacagatatttaaagaggcagaccttaacaatgatggaaagatagattttaacgaatttatgaaaatgatgctg gatgccaagtga |
|
Protein
| Protein ID | pfu_aug1.0_26161.1_11755.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26161.1_11755.t1 MEQFKTLVHKMSTDKTTELRETFEMFDKNHDGYITRKEYSQVLRKIGQDVDDETVEQIFKEADLNNDGKIDFNEFMKMML DAK |
|