Gene
| Gene Model ID | pfu_aug1.0_26191.1_47772 |
|---|---|
| Locus | scaffold26191.1 : 1772 ... 7946 : - |
| To GenomeBrowser | scaffold26191.1:1772..7946 |
| Genes list of scaffold | scaffold26191.1 |
| Synonym | pfu_aug2.0_80.1_00192 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_26191.1_47772.t1 | 2 | 1 | P4Ha_N | 3 | 114 | 1.2e-19 | 70.4 | 1.4e-22 | 1.1e-18 | 67.3 |
| pfu_aug1.0_26191.1_47772.t1 | 2 | 2 | P4Ha_N | 145 | 167 | 1.2e-19 | 70.4 | 0.28 | 2100.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_26191.1_47772.t1 | gi|291387304|ref|XP_002710243.1| | PREDICTED: prolyl 4-hydroxylase subunit alpha-2 isoform X1 [Oryctolagus cuniculus] | 4.0e-33 |
Transcript
| Transcript ID | pfu_aug1.0_26191.1_47772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26191.1_47772.t1 agtagcaaacgaattaaatgttcacagtgaggaagtactgaaaagaaaggagaattacctacacaatcctgtgaatgctt atctctacatgaaaaagtttacaatagactgggataaagacatagctccgttatttcagagggatgctgaaacaggtctg caacaaagtgtgcctcttcaattaaaacttgcacattgtattacagaggtgtataaaaagttgaaggagatcaaagagta cctccctacatacgaggatttaaacggggcggtggccgctctcctccgattacaagacacgtacaagctgaacactgacg atctggccagaggcattgtgggaaaatctcagtccagttctatgacaggtgatgttcgaagggcactcatccttacagat gaattattagccattgcaccctatcatacaagggcacaaaataatcgtcgttattatgagagaattctgaaggagcatga tgaagacagcaaagtaagtgaagaaggggtcgttgacgacactcaagagacgcattacagacagtcagaggaatttcaga cttatgaatcattatgtagaggagaggatacaaaagtaaataaagataagcatcgcctggtttgccgttatcacaataac aataatccgtcgttactgatacaacccatcaaacaagaggagatatttttagacccatggattgtcatgtattacgatgt tatgtctgattcagaaataaaagttattaaagaacttgctacaccaaaagtaagttttcatgcttaa |
|
Protein
| Protein ID | pfu_aug1.0_26191.1_47772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26191.1_47772.t1 VANELNVHSEEVLKRKENYLHNPVNAYLYMKKFTIDWDKDIAPLFQRDAETGLQQSVPLQLKLAHCITEVYKKLKEIKEY LPTYEDLNGAVAALLRLQDTYKLNTDDLARGIVGKSQSSSMTGDVRRALILTDELLAIAPYHTRAQNNRRYYERILKEHD EDSKVSEEGVVDDTQETHYRQSEEFQTYESLCRGEDTKVNKDKHRLVCRYHNNNNPSLLIQPIKQEEIFLDPWIVMYYDV MSDSEIKVIKELATPKVSFHA |
|