Gene
| Gene Model ID | pfu_aug1.0_26229.1_55132 |
|---|---|
| Locus | scaffold26229.1 : 16 ... 7937 : - |
| To GenomeBrowser | scaffold26229.1:16..7937 |
| Genes list of scaffold | scaffold26229.1 |
| Synonym | pfu_aug2.0_603.1_10977 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_26229.1_55132.t1 | 1 | 1 | zf-RING_2 | 15 | 59 | 1.6e-07 | 31.0 | 1.3e-10 | 1.6e-07 | 31.0 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 1 | zf-C3HC4 | 16 | 58 | 4.6e-09 | 35.8 | 3.7e-12 | 4.6e-09 | 35.8 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 58 | 2.4e-07 | 30.6 | 2.0e-10 | 2.4e-07 | 30.6 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 1 | zf-RING_5 | 16 | 59 | 3.6e-07 | 29.7 | 2.9e-10 | 3.6e-07 | 29.7 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 58 | 1.5e-06 | 27.9 | 1.2e-09 | 1.5e-06 | 27.9 |
| pfu_aug1.0_26229.1_55132.t1 | 4 | 1 | zf-B_box | 30 | 43 | 1.4e-10 | 40.8 | 0.25 | 310.0 | 1.3 |
| pfu_aug1.0_26229.1_55132.t1 | 4 | 2 | zf-B_box | 53 | 60 | 1.4e-10 | 40.8 | 0.83 | 1000.0 | -0.4 |
| pfu_aug1.0_26229.1_55132.t1 | 4 | 3 | zf-B_box | 95 | 139 | 1.4e-10 | 40.8 | 0.00055 | 0.68 | 9.8 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 2 | zf-C3HC4_2 | 97 | 128 | 2.4e-07 | 30.6 | 0.013 | 16.0 | 5.6 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 2 | zf-RING_5 | 97 | 129 | 3.6e-07 | 29.7 | 0.0013 | 1.7 | 8.4 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 2 | zf-C3HC4 | 98 | 130 | 4.6e-09 | 35.8 | 0.16 | 200.0 | 1.7 |
| pfu_aug1.0_26229.1_55132.t1 | 2 | 2 | zf-C3HC4_4 | 114 | 131 | 1.5e-06 | 27.9 | 0.16 | 190.0 | 2.0 |
| pfu_aug1.0_26229.1_55132.t1 | 4 | 4 | zf-B_box | 158 | 197 | 1.4e-10 | 40.8 | 1.1e-13 | 1.4e-10 | 40.8 |
Transcript
| Transcript ID | pfu_aug1.0_26229.1_55132.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26229.1_55132.t1 atggcagaggcatccttgtcaactcttaccgatgattttctcacttgcaatatttgtctggaaatctaccaagaacctaa gatcttatcctgcctgcattcgttttgccggacatgtttggaaaaacatctagataaaagcaagagcaacaaaaatttga tatgccccctttgccgcgaagtaactcttttgaagcaagagagagtagaaggactgaaaaacaatttcttcatccaaaat ctgatagatttcagcatttcaacatcaactcaaatcaaggaaaaacaatgctcgtattgctcccttattgaaaagtccaa tccttcctttgggaagtgtctcacttgtggtgattttctatgttctgaatgctataatagacataccctaacaacggaga cctttgaccacgaaatcgcgacgcttgctgacctacaaagcggtagatacaacgagaaactcagatcaagtcaacagatt ccctgtcatgagcacaaaaaggaatttcttagatatttctgcgatacatgtgatgtccccgtatgccgagactgcgtgat tcttggtcaccgacagggtcatgatataatagaaccatccaaggcgatcgagaacaggcgactggagattggttgtttgc tcgagggattgaacggaaagctagaagaaatcaaagaaagaagtgcgatactgaaggacgaagaaagtagagtggatgta acagaacgtgacatgtcacaattgatacaagatgcaaccgacaggtgggtggaaatgattaaaaatgaaggaataaaagc tcaagttctcttggaggcctgcattaaaaagagaagagaagacctggtaacgactagaagtaaacaagatgaaaagttac gtctcttaaaaaagtcgacggaattttgccaaaaagtagtcagcgatggactagaaggagaaatcatatttcttcagcaa atgatgcgagagcggctttcattcctagagacaagcgtccagtgtacagatgctcttacaccatgggtgccgccaaccat acaaatatcgaaaatgttagatgaaactcttgtgcaggatttattcaggttcggagagtcatgttcaccaacaacaaaat catgtgcgaaaggaaatgccgctgttaattatgaacatcaggaaacctacttatcaagttcgatgccgaaatcactggct aaatcttgtccaaaccttgacgaagtagctaacacggatccaaaattgtcaaaaggaaatgacaggtcaaaaggaaagaa ggaagatcctaaagataaacaagattctatgggacttattcgaatacgtgatataaattgcgatgctgaagaagaagtga acagatcaaaattaacatcagtagcttggatgaatgaggattcatttgtcgttgtagacaaagccaatgggaaaataaag caatataatacgaacggcaagctgttaaactcagttaaattgaaaaatgtgttaactgtgacatgttccaaaacactcat atactgtggactgagtagcggtcagattaaagttctcaatgcaaaatttgacatccttgatgttgcttctcaaaaatatg gatactgtgttccagttgcgacggggaaattgaaatcacgagtccttctgctaggtagttcgtgtatgaatgtcgtaagc aaggaaacagaaatttctaaatccatgccttacacagatacaactggcaaacagataaagatgaagccaatgttccccca ttgttgtcgagaggacaaagttgtcgtttcggattgggattctggatcagtatgcgttataaattcagatggaagaatat cagacacatatgaaaaggaaagcagcacttggctaccgggcggactgggatgtgacaacaaaaataatatatttatagct gactattatagtaatgagttaattgtattgaattctaagtgtagatatctgacaaccctcaagatgcccaatgtttataa cccaaggtgcatggcttgttctgacagcaacaaacttcttataacatttaataatagcgttgccatgttccaaatttcaa aaggaaaaatctaa |
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Protein
| Protein ID | pfu_aug1.0_26229.1_55132.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26229.1_55132.t1 MAEASLSTLTDDFLTCNICLEIYQEPKILSCLHSFCRTCLEKHLDKSKSNKNLICPLCREVTLLKQERVEGLKNNFFIQN LIDFSISTSTQIKEKQCSYCSLIEKSNPSFGKCLTCGDFLCSECYNRHTLTTETFDHEIATLADLQSGRYNEKLRSSQQI PCHEHKKEFLRYFCDTCDVPVCRDCVILGHRQGHDIIEPSKAIENRRLEIGCLLEGLNGKLEEIKERSAILKDEESRVDV TERDMSQLIQDATDRWVEMIKNEGIKAQVLLEACIKKRREDLVTTRSKQDEKLRLLKKSTEFCQKVVSDGLEGEIIFLQQ MMRERLSFLETSVQCTDALTPWVPPTIQISKMLDETLVQDLFRFGESCSPTTKSCAKGNAAVNYEHQETYLSSSMPKSLA KSCPNLDEVANTDPKLSKGNDRSKGKKEDPKDKQDSMGLIRIRDINCDAEEEVNRSKLTSVAWMNEDSFVVVDKANGKIK QYNTNGKLLNSVKLKNVLTVTCSKTLIYCGLSSGQIKVLNAKFDILDVASQKYGYCVPVATGKLKSRVLLLGSSCMNVVS KETEISKSMPYTDTTGKQIKMKPMFPHCCREDKVVVSDWDSGSVCVINSDGRISDTYEKESSTWLPGGLGCDNKNNIFIA DYYSNELIVLNSKCRYLTTLKMPNVYNPRCMACSDSNKLLITFNNSVAMFQISKGKI |
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