Gene
| Gene Model ID | pfu_aug1.0_2625.1_30187 |
|---|---|
| Locus | scaffold2625.1 : 42622 ... 56165 : - |
| To GenomeBrowser | scaffold2625.1:42622..56165 |
| Genes list of scaffold | scaffold2625.1 |
| Synonym | pfu_aug2.0_39.1_30057 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2625.1_30187.t1 | 2 | 1 | MFS_1 | 114 | 289 | 3.7e-27 | 94.9 | 9.1e-26 | 6.7e-22 | 77.6 |
| pfu_aug1.0_2625.1_30187.t1 | 2 | 2 | MFS_1 | 332 | 391 | 3.7e-27 | 94.9 | 4.0e-09 | 3.0e-05 | 22.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2625.1_30187.t1 | gi|62860030|ref|NP_001015938.1| | MFS-type transporter SLC18B1 [Xenopus (Silurana) tropicalis] | 1.99965e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2625.1_30187.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2625.1_30187.t1 atggagtcttcagagaatcatgacatgaaataccaagacttttacataccatacgctgacgatactaccagtgtttctga ccaaacgtacgatgtcttacaactaaatacgaatggatccctacagtacataccctcagagacggattcctttaaaggcg gggcaccctttgcctccacggcagccttactgcaggtacaagagactcggatgtcagtgtcaattactacagtcaatgag gatgaaatgacattagatccctccacccagtcccctggctacaacttctcatttaaaacgactccaagggacaagaaatt tctattactggcgataggtctggtgaatctgtttgcagcgacaagcttctctctcctcggaccattttttcctcagaagg cggttgataaaggggcaagtcagacagtcgtgggtctaattttcggagtctttgaattcgtgtctttcatttcttcgccg gttttcggtaattatatatccagtatcggacctaggtttatgttcacatccgggatcatggtcagtggcgtatgtactgt cctgtttggtgttctaggcacgagtcccgagggctaccagtttgtgttgatgtgttttctgacccgggctatggatgccc tcggtacctcggcattagccacctccagttatgctgttttggccttcaccttccccagatatctggccactgtagtggga taccttgaaatgttcacgggagttggtatgatgctaggtcccgccatagggggcgctctctactccatcggtggttacgg catgccgttttacgttattggaagcgtccagttcctcagtggcgttgttggcgtattcgttatgccatcgtcaaacgttt tctttgagtccggtgcatgtaagtttggtgtttcttgtagccccggctctgtacgccatagtaacacctttctggggctg gctctcagatgccaaaacaacgttgatacttacgggatagtatccggctacttcaacgcttgtttctcgttaggagcctt tcttggtcccatatgtggtagtgcggtgatggaggccaccagctttggttactccgccaccatttgtgctggattgtttc tcttttccggcctattaatcgggttgtacataatatttggaaaacaagggaagacaacagaagagaatgccgattattca tcattgatttatgaggcaggcactgcgacttttcatgatagataa |
|
Protein
| Protein ID | pfu_aug1.0_2625.1_30187.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2625.1_30187.t1 MESSENHDMKYQDFYIPYADDTTSVSDQTYDVLQLNTNGSLQYIPSETDSFKGGAPFASTAALLQVQETRMSVSITTVNE DEMTLDPSTQSPGYNFSFKTTPRDKKFLLLAIGLVNLFAATSFSLLGPFFPQKAVDKGASQTVVGLIFGVFEFVSFISSP VFGNYISSIGPRFMFTSGIMVSGVCTVLFGVLGTSPEGYQFVLMCFLTRAMDALGTSALATSSYAVLAFTFPRYLATVVG YLEMFTGVGMMLGPAIGGALYSIGGYGMPFYVIGSVQFLSGVVGVFVMPSSNVFFESGACKFGVSCSPGSVRHSNTFLGL ALRCQNNVDTYGIVSGYFNACFSLGAFLGPICGSAVMEATSFGYSATICAGLFLFSGLLIGLYIIFGKQGKTTEENADYS SLIYEAGTATFHDR |
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