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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_26875.1_55184
Locus scaffold26875.1 : 1226 ... 12453 : +
To GenomeBrowser scaffold26875.1:1226..12453
Genes list of scaffold scaffold26875.1
Synonym pfu_aug2.0_1589.1_31781

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_26875.1_55184.t1 1 1 7tm_1 61 331 1.4e-31 109.5 1.1e-35 1.6e-31 109.3

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
trochophore 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_26875.1_55184.t1
Definition-
>pfu_aug1.0_26875.1_55184.t1
atggaagataatgtgacgtcagacaacgtgtcctcggaggcgcccgcctgtcacgtatggcttaaggatgctttacctaa
tttatacaatgctacattagaccaagtgaattctcagcttgtccgacggaatataggaggaatccttcttttatcagccc
tgatcatcgtggggctaataggtaatgtacatgtaatgtggatctacctacgtcaattcaaaacttctaattatcgtgtg
tacgtattgtggttagctatactggacatacttaactgtacagttgttgcaccgatggtgatttcgtatttatttttccc
ggtacagtttccttcgctactttactgcaaactcttccgttttgtgttatacgtcatggcgatttcgtcgacgtcatcgc
ttatcgcaattgcgattgaccgctacagaaaagtgtgcaatcctctcggtaaacagttcagcattaaaaaggcgaagttt
ctgtgtgtgctaagtctttgtgtaggaataggcatgtcatggcccgcgcccatcatgtatggaatgagccacgccccaac
aggggtcccgggactcgagggatatagatgttttaccgaggactacttcaaaacaacatactatcaaaccatatttaacg
caatacttggactttattttttcgtcgtatcttccacgttggtatttgtttacatacgtatcgggaagcatatcaagacg
catcagaagtttcaaaacaacattcgcaagatgtcggtacgtaacccggaagaactgaaagcggtgacgaacgccggttc
caacaagtcaaccgtcaccctctgtgttgttaccatagcttacatacttagtgctctaccccatcatatactagctacgc
tcatcttccttaagaaggactttgactgctccctgagtctggtgtcggctcagctttattacaccttcatatggtcgtat
tttgtcaattctgttgtgaacccgtttatttatggaatacgagacaagaagttcagattcgccgtcaaacggctatacag
aaagaccattgatagccctgctccccctgtgacgacagtagcttactga

Protein
Protein IDpfu_aug1.0_26875.1_55184.t1
Definition-
>pfu_aug1.0_26875.1_55184.t1
MEDNVTSDNVSSEAPACHVWLKDALPNLYNATLDQVNSQLVRRNIGGILLLSALIIVGLIGNVHVMWIYLRQFKTSNYRV
YVLWLAILDILNCTVVAPMVISYLFFPVQFPSLLYCKLFRFVLYVMAISSTSSLIAIAIDRYRKVCNPLGKQFSIKKAKF
LCVLSLCVGIGMSWPAPIMYGMSHAPTGVPGLEGYRCFTEDYFKTTYYQTIFNAILGLYFFVVSSTLVFVYIRIGKHIKT
HQKFQNNIRKMSVRNPEELKAVTNAGSNKSTVTLCVVTIAYILSALPHHILATLIFLKKDFDCSLSLVSAQLYYTFIWSY
FVNSVVNPFIYGIRDKKFRFAVKRLYRKTIDSPAPPVTTVAY

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