Gene
| Gene Model ID | pfu_aug1.0_2688.1_30217 |
|---|---|
| Locus | scaffold2688.1 : 16091 ... 28505 : - |
| To GenomeBrowser | scaffold2688.1:16091..28505 |
| Genes list of scaffold | scaffold2688.1 |
| Synonym | pfu_aug2.0_277.1_23800 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2688.1_30217.t1 | 3 | 1 | I-set | 2 | 86 | 1.3e-34 | 117.8 | 2.1e-22 | 4.5e-19 | 68.0 |
| pfu_aug1.0_2688.1_30217.t1 | 2 | 1 | Ig_2 | 3 | 80 | 1.0e-15 | 57.6 | 4.8e-13 | 1.0e-09 | 38.3 |
| pfu_aug1.0_2688.1_30217.t1 | 2 | 1 | V-set | 4 | 75 | 4.6e-07 | 29.7 | 2.4e-07 | 0.0005 | 19.9 |
| pfu_aug1.0_2688.1_30217.t1 | 1 | 1 | Ig_3 | 14 | 73 | 6.7e-08 | 32.9 | 8.0e-11 | 1.7e-07 | 31.6 |
| pfu_aug1.0_2688.1_30217.t1 | 3 | 2 | I-set | 551 | 634 | 1.3e-34 | 117.8 | 1.2e-14 | 2.6e-11 | 43.2 |
| pfu_aug1.0_2688.1_30217.t1 | 2 | 2 | Ig_2 | 554 | 631 | 1.0e-15 | 57.6 | 3.5e-06 | 0.0074 | 16.3 |
| pfu_aug1.0_2688.1_30217.t1 | 2 | 2 | V-set | 590 | 631 | 4.6e-07 | 29.7 | 0.0048 | 10.0 | 6.0 |
| pfu_aug1.0_2688.1_30217.t1 | 3 | 3 | I-set | 669 | 695 | 1.3e-34 | 117.8 | 0.11 | 240.0 | 1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2688.1_30217.t1 | gi|339250834|ref|XP_003374402.1| | putative immunoglobulin I-set domain protein [Trichinella spiralis] | 2.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_2688.1_30217.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2688.1_30217.t1 atgccagagcagactaaggcgcctctgggtggcagtaagaggtttgaatgccgagtggtaggtttccccagacctaccgt tcaatggttcaaggacggcagggacatcacccatgacgaccgattcgagttcgactactccattgacggggtcattacca tggtgattcataatgtgacatttaaggaccaaggagtatatagctgtagagctgagaattcagagggatgggcagcaact gccgccatattaaatgttcgagggattgataatgagagtatcgtatctgagcaatcgactgcagtatctgaaacaccatt atcaacctctgctgaaagtgctcagaaccgacaagatgaagtacaaaaagataacaataaagaaccaatcaataaagaat atttacaaaacctcagaaacgaaaagaaacaactcaatctaaaaacagaggaaacagaaatccgcgatgataatgtcgac gataagattcatatagaaaatgagaaaaatgaaagaaaggcaactcttcgtaaacagcacatggtcatcgaatcagatga agacgaggatgacaccagaagcagatccttgtcgattcatgatgatgactactttgcaagtacggaatccctaggtatgg ggatgtctcgggaaagtcttgctttctctcagctggaccttttctgtgcggagactattcctgaaaaagacgaaaacttg tcacggtcatcctccaaagatgctgaggccatggaagaggacgactttgtagatcaagagctcaagcagcaagctattct ggatgctctgaagcaaagcgaatattcagaggatattgacagttcagagctactatcctctgatccagaagactatggat tgaaattggcaaagcatgcgagagaaatatcagaagaaatgtcatcgataaatcaagcttggagcgaaacaacatcttac acggaatacacagagtcttcgttttggaccacagacgttgacggcatctctatggatggagtaccaactatggaaccagt ttctgctaaccaaattaatgatacgcaagcagtacgagatgttagtgttgttgacaagaaacaagacaatgtcaaagaag ttgaggccaagaaaacagatgcgccttcaatactgaagagtgaaggccaaatgaaaatttccgcggaaggaactgaggga aatagttccattagtgaggataaacagccattagcaaatgaacccttcgataaaaaggaagcagacgattcatatcggaa acccggtaaggttgaaaagatcccaagtgttgaagatgatgacaaaggtcgtcaggaaacagaccttacaaataaaagac caagtaaaagaaatgagagcagcaattcaaacgatcaagacttacacatttctgggtcgattccaacaatcgaggacaaa atagaaggtaaaaaggctgacatttctgagagagaacatccttgtcatcaaatctcaagtgacattaagcagtcagtggg gccagttgaagaaacgccgttaaagatggaagcaattgcaaatgtaaaaagcaaaccaaaagatacatcagacgagttgg cacttgacgtcacaactgatatttcttcaaagcagaaacctcttagtcccccaaggatcctcagagcaacttcagatgtt cgaattgaaaacggcgaaagcattgttcttgaatggaaaatatccggtaacccagtacctgacataaagatgtttaaaga cggtaaaccagtcaatttttgtgatggacaaaacattttcaaagaggacgagtacgttgccatggagatactagacgcga caaccaatgattccggttgctatgagatacacctgacaaattcccttgggactgatataggaatgataaatgtaatggtg aaggatagccggagttcgagtccaaagggtggggctttggagcagaaagaaaaagaaagtttaccagagatgttcgccta tccacctgaattctcagtggcgccatctgactgtgtcatacaggacggacggacagtcatcatcaaaggctgtgtaaagg gtgagtatgatgcagcatattag |
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Protein
| Protein ID | pfu_aug1.0_2688.1_30217.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2688.1_30217.t1 MPEQTKAPLGGSKRFECRVVGFPRPTVQWFKDGRDITHDDRFEFDYSIDGVITMVIHNVTFKDQGVYSCRAENSEGWAAT AAILNVRGIDNESIVSEQSTAVSETPLSTSAESAQNRQDEVQKDNNKEPINKEYLQNLRNEKKQLNLKTEETEIRDDNVD DKIHIENEKNERKATLRKQHMVIESDEDEDDTRSRSLSIHDDDYFASTESLGMGMSRESLAFSQLDLFCAETIPEKDENL SRSSSKDAEAMEEDDFVDQELKQQAILDALKQSEYSEDIDSSELLSSDPEDYGLKLAKHAREISEEMSSINQAWSETTSY TEYTESSFWTTDVDGISMDGVPTMEPVSANQINDTQAVRDVSVVDKKQDNVKEVEAKKTDAPSILKSEGQMKISAEGTEG NSSISEDKQPLANEPFDKKEADDSYRKPGKVEKIPSVEDDDKGRQETDLTNKRPSKRNESSNSNDQDLHISGSIPTIEDK IEGKKADISEREHPCHQISSDIKQSVGPVEETPLKMEAIANVKSKPKDTSDELALDVTTDISSKQKPLSPPRILRATSDV RIENGESIVLEWKISGNPVPDIKMFKDGKPVNFCDGQNIFKEDEYVAMEILDATTNDSGCYEIHLTNSLGTDIGMINVMV KDSRSSSPKGGALEQKEKESLPEMFAYPPEFSVAPSDCVIQDGRTVIIKGCVKGEYDAAY |
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