Gene
| Gene Model ID | pfu_aug1.0_269.1_07447 |
|---|---|
| Locus | scaffold269.1 : 1 ... 5150 : + |
| To GenomeBrowser | scaffold269.1:1..5150 |
| Genes list of scaffold | scaffold269.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | myosin light chain kinase |
| Description | Myosin light chain kinase partial sequence. BLASTP hit to JH000012 (Cricetulus griseus). This gene maight be a kinase domain of twitchin, which is similar to the catalytic subunit of myosin light chain kinase. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_269.1_07447.t1 | 1 | 1 | fn3 | 4 | 88 | 2.0e-16 | 59.8 | 2.2e-19 | 3.6e-16 | 59.0 |
| pfu_aug1.0_269.1_07447.t1 | 1 | 1 | Pkinase | 133 | 373 | 0.0 | 224.0 | 0.0 | 0.0 | 223.7 |
| pfu_aug1.0_269.1_07447.t1 | 1 | 1 | Pkinase_Tyr | 135 | 345 | 7.80523e-43 | 146.4 | 0.0 | 1.00053e-42 | 146.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_269.1_07447.t1 | gi|344240306|gb|EGV96409.1| | Myosin light chain kinase, smooth muscle [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_269.1_07447.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_269.1_07447.t1 acgtaccagattctccagtgtgtcgcccggcagcctcagaggtcaccttgaggtcaatcatcatcacatggtcaggaccc gcctacgacggaggaagtcaggtgacgggatacaaagtcgaaatctgtgacgccgaggaggataaatggcaaacactaac agacaactgtcatagtacgtcgtacctagcggagaatctacatccacactctccctatttcttccgagtgagtgctaaaa atagacatgggtttggcaagcccagcgaagtatcagctgttatcgtaactcgagaccaacgaccagaaatccgtctgtcc attgattcggatgatgaagacttgccgttcgaccctcgacttgtaagcatctcacaggatcgagtgtttgaagacgctta tgacttgaaggaagaagtcggcaagggaaagtttggtaaagttttcaagtgtacagagaagtcatcaggacaaacttttg ccgctaaaatcttgcgatgtcgaacgagccgcgagaaagagaatataagacaggaagtggaaataatgaaccaactgact caccctaagttactgatgttatgggacgcgtatgaggcagcaaaaaatatgatcctcgtaatggaatatgtcgcaggtgg agaactgtttgacagagtggctgatgaagacttagaactgacggagcgcgactgtgtccattttgtacgtcaaatctgca atggtgtacagtacatgcatactaaatcaataatccacctagatctcaaaccagagaacattctatgtgttcacaaggac aataatctgatcaaaattatagattttggactggcgcgcacacatacaccgggggagagtctcaaagcaatgtgcggaac accagagtttatagccccggaggtggttaattacgaggaggttggactccagactgatatatggagtctgggagtcattt gttatgttttgctgtctggtttatctccctttatgggtgatagtgatatagagacgttagctaacgtaacaaggggtgat tttgattatgatgatgaagctttcgatgaaatatcaggaacagcaaaagacttcatcaacaaagcactgataaaagacaa aatgtga |
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Protein
| Protein ID | pfu_aug1.0_269.1_07447.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_269.1_07447.t1 VPDSPVCRPAASEVTLRSIIITWSGPAYDGGSQVTGYKVEICDAEEDKWQTLTDNCHSTSYLAENLHPHSPYFFRVSAKN RHGFGKPSEVSAVIVTRDQRPEIRLSIDSDDEDLPFDPRLVSISQDRVFEDAYDLKEEVGKGKFGKVFKCTEKSSGQTFA AKILRCRTSREKENIRQEVEIMNQLTHPKLLMLWDAYEAAKNMILVMEYVAGGELFDRVADEDLELTERDCVHFVRQICN GVQYMHTKSIIHLDLKPENILCVHKDNNLIKIIDFGLARTHTPGESLKAMCGTPEFIAPEVVNYEEVGLQTDIWSLGVIC YVLLSGLSPFMGDSDIETLANVTRGDFDYDDEAFDEISGTAKDFINKALIKDKM |
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