Gene
Gene Model ID | pfu_aug1.0_269.1_07447 |
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Locus | scaffold269.1 : 1 ... 5150 : + |
To GenomeBrowser | scaffold269.1:1..5150 |
Genes list of scaffold | scaffold269.1 |
Synonym | NA |
Manual annotation
Study field | structural proteins |
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Gene name | myosin light chain kinase |
Description | Myosin light chain kinase partial sequence. BLASTP hit to JH000012 (Cricetulus griseus). This gene maight be a kinase domain of twitchin, which is similar to the catalytic subunit of myosin light chain kinase. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_269.1_07447.t1 | 1 | 1 | fn3 | 4 | 88 | 2.0e-16 | 59.8 | 2.2e-19 | 3.6e-16 | 59.0 |
pfu_aug1.0_269.1_07447.t1 | 1 | 1 | Pkinase | 133 | 373 | 0.0 | 224.0 | 0.0 | 0.0 | 223.7 |
pfu_aug1.0_269.1_07447.t1 | 1 | 1 | Pkinase_Tyr | 135 | 345 | 7.80523e-43 | 146.4 | 0.0 | 1.00053e-42 | 146.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_269.1_07447.t1 | gi|344240306|gb|EGV96409.1| | Myosin light chain kinase, smooth muscle [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
adductorMuscle | 2 |
Transcript
Transcript ID | pfu_aug1.0_269.1_07447.t1 |
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Definition | - |
>pfu_aug1.0_269.1_07447.t1 acgtaccagattctccagtgtgtcgcccggcagcctcagaggtcaccttgaggtcaatcatcatcacatggtcaggaccc gcctacgacggaggaagtcaggtgacgggatacaaagtcgaaatctgtgacgccgaggaggataaatggcaaacactaac agacaactgtcatagtacgtcgtacctagcggagaatctacatccacactctccctatttcttccgagtgagtgctaaaa atagacatgggtttggcaagcccagcgaagtatcagctgttatcgtaactcgagaccaacgaccagaaatccgtctgtcc attgattcggatgatgaagacttgccgttcgaccctcgacttgtaagcatctcacaggatcgagtgtttgaagacgctta tgacttgaaggaagaagtcggcaagggaaagtttggtaaagttttcaagtgtacagagaagtcatcaggacaaacttttg ccgctaaaatcttgcgatgtcgaacgagccgcgagaaagagaatataagacaggaagtggaaataatgaaccaactgact caccctaagttactgatgttatgggacgcgtatgaggcagcaaaaaatatgatcctcgtaatggaatatgtcgcaggtgg agaactgtttgacagagtggctgatgaagacttagaactgacggagcgcgactgtgtccattttgtacgtcaaatctgca atggtgtacagtacatgcatactaaatcaataatccacctagatctcaaaccagagaacattctatgtgttcacaaggac aataatctgatcaaaattatagattttggactggcgcgcacacatacaccgggggagagtctcaaagcaatgtgcggaac accagagtttatagccccggaggtggttaattacgaggaggttggactccagactgatatatggagtctgggagtcattt gttatgttttgctgtctggtttatctccctttatgggtgatagtgatatagagacgttagctaacgtaacaaggggtgat tttgattatgatgatgaagctttcgatgaaatatcaggaacagcaaaagacttcatcaacaaagcactgataaaagacaa aatgtga |
Protein
Protein ID | pfu_aug1.0_269.1_07447.t1 |
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Definition | - |
>pfu_aug1.0_269.1_07447.t1 VPDSPVCRPAASEVTLRSIIITWSGPAYDGGSQVTGYKVEICDAEEDKWQTLTDNCHSTSYLAENLHPHSPYFFRVSAKN RHGFGKPSEVSAVIVTRDQRPEIRLSIDSDDEDLPFDPRLVSISQDRVFEDAYDLKEEVGKGKFGKVFKCTEKSSGQTFA AKILRCRTSREKENIRQEVEIMNQLTHPKLLMLWDAYEAAKNMILVMEYVAGGELFDRVADEDLELTERDCVHFVRQICN GVQYMHTKSIIHLDLKPENILCVHKDNNLIKIIDFGLARTHTPGESLKAMCGTPEFIAPEVVNYEEVGLQTDIWSLGVIC YVLLSGLSPFMGDSDIETLANVTRGDFDYDDEAFDEISGTAKDFINKALIKDKM |