Gene
| Gene Model ID | pfu_aug1.0_270.1_07452 |
|---|---|
| Locus | scaffold270.1 : 1 ... 14569 : + |
| To GenomeBrowser | scaffold270.1:1..14569 |
| Genes list of scaffold | scaffold270.1 |
| Synonym | pfu_aug2.0_282.1_07294 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_270.1_07452.t1 | 2 | 1 | Skp1_POZ | 6 | 32 | 2.8e-09 | 36.9 | 1.3e-12 | 9.5e-09 | 35.2 |
| pfu_aug1.0_270.1_07452.t1 | 1 | 1 | Skp1 | 52 | 128 | 4.99997e-41 | 138.6 | 1.26117e-44 | 8.60005e-41 | 137.8 |
| pfu_aug1.0_270.1_07452.t1 | 2 | 2 | Skp1_POZ | 87 | 96 | 2.8e-09 | 36.9 | 0.39 | 2900.0 | -1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_270.1_07452.t1 | gi|114052370|ref|NP_001040518.1| | S-phase kinase-associated protein [Bombyx mori] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_270.1_07452.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_270.1_07452.t1 atttgggagtagatgacgatgaggaagaagctgtgccattacctaatgttaacgctgctatcttgaccaaggtaattaac tggtgcacataccacaaagacgacccaccaccgcctgaagacgatgaaaataaggagaaacgcactgacgatattggctc atgggatgcagattttctcaaagtggatcaaggaactctatttgagttgattttagcagcaaattacttggatattaaag gattattagatgtcacatgcaagactgttgccaatatgatcaaaggaaaatctccagaggaaatcagaaagaccttcaat attaaaaatgatttcactcccgctgaagaagaacaggtgcggaaggaaaatgaatggtgcgaggagaagtag |
|
Protein
| Protein ID | pfu_aug1.0_270.1_07452.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_270.1_07452.t1 LGVDDDEEEAVPLPNVNAAILTKVINWCTYHKDDPPPPEDDENKEKRTDDIGSWDADFLKVDQGTLFELILAANYLDIKG LLDVTCKTVANMIKGKSPEEIRKTFNIKNDFTPAEEEQVRKENEWCEEK |
|